Challenges and solutions in determining urolithiasis caseloads using the digital infrastructure of a clinical data warehouse

Background: To provide more evidence in urolithiasis research, we have established the German Nationwide Register for RECurrent URolithiasis (RECUR) using local clinical data warehouses (CDWH). For RECUR and other registers relying on digitalized clinical data, it is crucial to ensure the data’s reliability for answering scientific questions. In this work, we aim to compare the results of different CDWH-based queries on urolithiasis cases next to manual case extraction from the primary source.Methods: Sources for data extraction included the Medical Center University of Freiburg (MCUF) hospital information system (HIS), MCUF performance data (a clinical data set with merged data from patients including data from various time points throughout their treatment), and MCUF reimbursement data. We extracted data on caseloads in urolithiasis algorithmically (performance and reimbursement data) and compared those to a reference group compiled of manually extracted data from the local HIS and algorithmically extracted data.Results: Algorithmic extraction based on performance data resulted in correct and complete case identification as compared to the reference group. The case numbers from manual extraction from HIS data and algorithmic extraction from reimbursement data differed by 14% and 12%, respectively. The reasons for deviations in HIS data included human errors and a lack of data availability from different wards. Deviations in reimbursement data arose primarily due to the merging of cases in the context of reimbursement mechanisms. As the CDWH at MCUF is part of the German Medical Informatics Initiative (MII), the results can be transferred to other medical centers with similar CDWH structure.Conclusions: The current study provides firm evidence of the importance of clearly defining a study’s target variable, e.g., urolithiasis cases, and a thorough understanding of the data sources and modes used to extract the target data. Our work clearly shows that, depending on various data sources, a case is not a case is not a case.