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BERT4FCA: A method for bipartite link prediction using formal concept analysis and BERT

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  • Siqi Peng
  • Hongyuan Yang
  • Akihiro Yamamoto

Abstract

Link prediction in bipartite networks finds practical applications in various domains, including friend recommendation in social networks and chemical reaction prediction in metabolic networks. Recent studies have highlighted the potential for link prediction by maximal bi-cliques, which is a structural feature within bipartite networks that can be extracted using formal concept analysis (FCA). Although previous FCA-based methods for bipartite link prediction have achieved good performance, they still have the problem that they cannot fully capture the information of maximal bi-cliques. To solve this problem, we propose a novel method for link prediction in bipartite networks, utilizing a BERT-like transformer encoder network to enhance the contribution of FCA to link prediction. Our method facilitates bipartite link prediction by learning more information from the maximal bi-cliques and their order relations extracted by FCA. Experimental results on five real-world bipartite networks demonstrate that our method outperforms previous FCA-based methods, a state-of-the-art Graph Neural Network(GNN)-based method, and classic methods such as matrix-factorization and node2vec.

Suggested Citation

  • Siqi Peng & Hongyuan Yang & Akihiro Yamamoto, 2024. "BERT4FCA: A method for bipartite link prediction using formal concept analysis and BERT," PLOS ONE, Public Library of Science, vol. 19(6), pages 1-23, June.
  • Handle: RePEc:plo:pone00:0304858
    DOI: 10.1371/journal.pone.0304858
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    References listed on IDEAS

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    1. Siqi Peng & Akihiro Yamamoto & Kimihito Ito, 2023. "Link prediction on bipartite networks using matrix factorization with negative sample selection," PLOS ONE, Public Library of Science, vol. 18(8), pages 1-19, August.
    2. Lü, Linyuan & Zhou, Tao, 2011. "Link prediction in complex networks: A survey," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(6), pages 1150-1170.
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