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Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia

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  • Andrew Sundstrom
  • Elda Grabocka
  • Dafna Bar-Sagi
  • Bud Mishra

Abstract

Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a set of candidate image features that can formulate just such a quantitative description of xenographed colorectal chronic tumor hypoxia. Two features in particular give low-variance measures of chronic hypoxia near a vessel: intensity sampling that extends radially away from approximated blood vessel centroids, and multithresholding to segment tumor tissue into normal, hypoxic, and necrotic regions. From these features we derive a spatiotemporal logical expression whose truth value depends on its predicate clauses that are grounded in this histological evidence. As an alternative to the spatiotemporal logical formulation, we also propose a way to formulate a linear regression function that uses all of the image features to learn what chronic hypoxia looks like, and then gives a quantitative similarity score once it is trained on a set of histology images.

Suggested Citation

  • Andrew Sundstrom & Elda Grabocka & Dafna Bar-Sagi & Bud Mishra, 2016. "Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia," PLOS ONE, Public Library of Science, vol. 11(4), pages 1-30, April.
  • Handle: RePEc:plo:pone00:0153623
    DOI: 10.1371/journal.pone.0153623
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