IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0091225.html
   My bibliography  Save this article

Accuracy Evaluation of the Unified P-Value from Combining Correlated P-Values

Author

Listed:
  • Gelio Alves
  • Yi-Kuo Yu

Abstract

Meta-analysis methods that combine -values into a single unified -value are frequently employed to improve confidence in hypothesis testing. An assumption made by most meta-analysis methods is that the -values to be combined are independent, which may not always be true. To investigate the accuracy of the unified -value from combining correlated -values, we have evaluated a family of statistical methods that combine: independent, weighted independent, correlated, and weighted correlated -values. Statistical accuracy evaluation by combining simulated correlated -values showed that correlation among -values can have a significant effect on the accuracy of the combined -value obtained. Among the statistical methods evaluated those that weight -values compute more accurate combined -values than those that do not. Also, statistical methods that utilize the correlation information have the best performance, producing significantly more accurate combined -values. In our study we have demonstrated that statistical methods that combine -values based on the assumption of independence can produce inaccurate -values when combining correlated -values, even when the -values are only weakly correlated. Therefore, to prevent from drawing false conclusions during hypothesis testing, our study advises caution be used when interpreting the -value obtained from combining -values of unknown correlation. However, when the correlation information is available, the weighting-capable statistical method, first introduced by Brown and recently modified by Hou, seems to perform the best amongst the methods investigated.

Suggested Citation

  • Gelio Alves & Yi-Kuo Yu, 2014. "Accuracy Evaluation of the Unified P-Value from Combining Correlated P-Values," PLOS ONE, Public Library of Science, vol. 9(3), pages 1-11, March.
  • Handle: RePEc:plo:pone00:0091225
    DOI: 10.1371/journal.pone.0091225
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0091225
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0091225&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0091225?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Chen, Zhongxue & Nadarajah, Saralees, 2014. "On the optimally weighted z-test for combining probabilities from independent studies," Computational Statistics & Data Analysis, Elsevier, vol. 70(C), pages 387-394.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Chien Li-Chu, 2020. "Combining dependent p-values by gamma distributions," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 19(4-6), pages 1-12, December.
    2. Xiaqiong Wang & Yalu Wen, 2020. "A Systematic Comparison of Methods Designed for Association Analysis with Multi-Omics Data," Biostatistics and Biometrics Open Access Journal, Juniper Publishers Inc., vol. 10(2), pages 30-40, August.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Chen, Zhongxue & Huang, Hanwen & Ng, Hon Keung Tony, 2014. "An improved robust association test for GWAS with multiple diseases," Statistics & Probability Letters, Elsevier, vol. 91(C), pages 153-161.
    2. Chen Zhongxue & Han Shizhong & Wang Kai, 2017. "Genetic association test based on principal component analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 16(3), pages 189-198, August.
    3. Hong Zhang & Zheyang Wu, 2023. "The generalized Fisher's combination and accurate p‐value calculation under dependence," Biometrics, The International Biometric Society, vol. 79(2), pages 1159-1172, June.
    4. Chien Li-Chu, 2020. "Combining dependent p-values by gamma distributions," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 19(4-6), pages 1-12, December.
    5. Ashes Banerjee & Srinivas Pasupuleti & Mritunjay Kumar Singh & G.N. Pradeep Kumar, 2018. "An Investigation of Parallel Post-Laminar Flow through Coarse Granular Porous Media with the Wilkins Equation," Energies, MDPI, vol. 11(2), pages 1-19, February.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0091225. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.