A comprehensive ensemble model for comparing the allosteric effect of ordered and disordered proteins
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DOI: 10.1371/journal.pcbi.1006393
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References listed on IDEAS
- Chung-Jung Tsai & Ruth Nussinov, 2014. "A Unified View of “How Allostery Works”," PLOS Computational Biology, Public Library of Science, vol. 10(2), pages 1-12, February.
- Arnab Bhattacherjee & Stefan Wallin, 2013. "Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening," PLOS Computational Biology, Public Library of Science, vol. 9(10), pages 1-10, October.
- Hesam N. Motlagh & James O. Wrabl & Jing Li & Vincent J. Hilser, 2014. "The ensemble nature of allostery," Nature, Nature, vol. 508(7496), pages 331-339, April.
- Pilong Li & Sudeep Banjade & Hui-Chun Cheng & Soyeon Kim & Baoyu Chen & Liang Guo & Marc Llaguno & Javoris V. Hollingsworth & David S. King & Salman F. Banani & Paul S. Russo & Qiu-Xing Jiang & B. Tra, 2012. "Phase transitions in the assembly of multivalent signalling proteins," Nature, Nature, vol. 483(7389), pages 336-340, March.
- Jay H. Choi & Abigail H. Laurent & Vincent J. Hilser & Marc Ostermeier, 2015. "Design of protein switches based on an ensemble model of allostery," Nature Communications, Nature, vol. 6(1), pages 1-9, November.
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