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Discovery and engineering of the antibody response to a prominent skin commensal

Author

Listed:
  • Djenet Bousbaine

    (Stanford University
    Stanford University)

  • Katherine D. Bauman

    (Stanford University
    Stanford University)

  • Y. Erin Chen

    (Stanford University
    Stanford University)

  • Pranav V. Lalgudi

    (Stanford University
    Stanford University School of Medicine)

  • Tam T. D. Nguyen

    (Stanford University
    Stanford University)

  • Joyce M. Swenson

    (Stanford University
    Stanford University)

  • Victor K. Yu

    (Stanford University
    Stanford University)

  • Eunice Tsang

    (Stanford University
    Stanford University)

  • Sean Conlan

    (National Institutes of Health)

  • David B. Li

    (Stanford University
    Stanford University)

  • Amina Jbara

    (Stanford University
    Stanford University)

  • Aishan Zhao

    (Stanford University
    Stanford University)

  • Arash Naziripour

    (Stanford University
    Stanford University)

  • Alessandra Veinbachs

    (Stanford University
    Stanford University)

  • Yu E. Lee

    (Stanford University
    Stanford University)

  • Jennie L. Phung

    (Stanford University
    Stanford University)

  • Alex Dimas

    (Stanford University
    Stanford University)

  • Sunit Jain

    (Chan Zuckerberg Biohub)

  • Xiandong Meng

    (Stanford University)

  • Thi Phuong Thao Pham

    (Stanford University
    Stanford University)

  • Martin I. McLaughlin

    (Stanford University
    Stanford University)

  • Layla J. Barkal

    (Stanford University
    Stanford University
    Stanford University School of Medicine)

  • Inta Gribonika

    (National Institutes of Health
    National Institute of Allergy and Infectious Diseases)

  • Koen K. A. Van Rompay

    (University of California
    University of California)

  • Heidi H. Kong

    (National Institutes of Health)

  • Julia A. Segre

    (National Institutes of Health)

  • Yasmine Belkaid

    (National Institutes of Health
    National Institute of Allergy and Infectious Diseases)

  • Christopher O. Barnes

    (Stanford University
    Stanford University
    Chan Zuckerberg Biohub)

  • Michael A. Fischbach

    (Stanford University
    Stanford University
    Chan Zuckerberg Biohub)

Abstract

The ubiquitous skin colonist Staphylococcus epidermidis elicits a CD8+ T cell response pre-emptively, in the absence of an infection1. However, the scope and purpose of this anticommensal immune programme are not well defined, limiting our ability to harness it therapeutically. Here, we show that this colonist also induces a potent, durable and specific antibody response that is conserved in humans and non-human primates. A series of S. epidermidis cell-wall mutants revealed that the cell surface protein Aap is a predominant target. By colonizing mice with a strain of S. epidermidis in which the parallel β-helix domain of Aap is replaced by tetanus toxin fragment C, we elicit a potent neutralizing antibody response that protects mice against a lethal challenge. A similar strain of S. epidermidis expressing an Aap-SpyCatcher chimera can be conjugated with recombinant immunogens; the resulting labelled commensal elicits high antibody titres under conditions of physiologic colonization, including a robust IgA response in the nasal and pulmonary mucosa. Thus, immunity to a common skin colonist involves a coordinated T and B cell response, the latter of which can be redirected against pathogens as a new form of topical vaccination.

Suggested Citation

  • Djenet Bousbaine & Katherine D. Bauman & Y. Erin Chen & Pranav V. Lalgudi & Tam T. D. Nguyen & Joyce M. Swenson & Victor K. Yu & Eunice Tsang & Sean Conlan & David B. Li & Amina Jbara & Aishan Zhao & , 2025. "Discovery and engineering of the antibody response to a prominent skin commensal," Nature, Nature, vol. 638(8052), pages 1054-1064, February.
  • Handle: RePEc:nat:nature:v:638:y:2025:i:8052:d:10.1038_s41586-024-08489-4
    DOI: 10.1038/s41586-024-08489-4
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