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Blueprinting extendable nanomaterials with standardized protein blocks

Author

Listed:
  • Timothy F. Huddy

    (University of Washington
    University of Washington)

  • Yang Hsia

    (University of Washington
    University of Washington)

  • Ryan D. Kibler

    (University of Washington
    University of Washington)

  • Jinwei Xu

    (University of Washington
    University of Washington)

  • Neville Bethel

    (University of Washington
    University of Washington)

  • Deepesh Nagarajan

    (M.S. Ramaiah University of Applied Sciences)

  • Rachel Redler

    (NYU School of Medicine)

  • Philip J. Y. Leung

    (University of Washington
    University of Washington
    University of Washington)

  • Connor Weidle

    (University of Washington
    University of Washington)

  • Alexis Courbet

    (University of Washington
    University of Washington
    University of Washington)

  • Erin C. Yang

    (University of Washington
    University of Washington
    University of Washington)

  • Asim K. Bera

    (University of Washington
    University of Washington)

  • Nicolas Coudray

    (NYU School of Medicine
    NYU School of Medicine
    NYU Grossman School of Medicine)

  • S. John Calise

    (University of Washington)

  • Fatima A. Davila-Hernandez

    (University of Washington
    University of Washington)

  • Hannah L. Han

    (University of Washington
    University of Washington)

  • Kenneth D. Carr

    (University of Washington
    University of Washington)

  • Zhe Li

    (University of Washington
    University of Washington)

  • Ryan McHugh

    (University of Washington
    University of Washington)

  • Gabriella Reggiano

    (University of Washington
    University of Washington)

  • Alex Kang

    (University of Washington
    University of Washington)

  • Banumathi Sankaran

    (Lawrence Berkeley National Laboratory)

  • Miles S. Dickinson

    (University of Washington)

  • Brian Coventry

    (University of Washington
    University of Washington)

  • T. J. Brunette

    (University of Washington
    University of Washington)

  • Yulai Liu

    (University of Washington
    University of Washington)

  • Justas Dauparas

    (University of Washington
    University of Washington)

  • Andrew J. Borst

    (University of Washington
    University of Washington)

  • Damian Ekiert

    (NYU School of Medicine
    NYU School of Medicine)

  • Justin M. Kollman

    (University of Washington)

  • Gira Bhabha

    (NYU School of Medicine)

  • David Baker

    (University of Washington
    University of Washington
    University of Washington)

Abstract

A wooden house frame consists of many different lumber pieces, but because of the regularity of these building blocks, the structure can be designed using straightforward geometrical principles. The design of multicomponent protein assemblies, in comparison, has been much more complex, largely owing to the irregular shapes of protein structures1. Here we describe extendable linear, curved and angled protein building blocks, as well as inter-block interactions, that conform to specified geometric standards; assemblies designed using these blocks inherit their extendability and regular interaction surfaces, enabling them to be expanded or contracted by varying the number of modules, and reinforced with secondary struts. Using X-ray crystallography and electron microscopy, we validate nanomaterial designs ranging from simple polygonal and circular oligomers that can be concentrically nested, up to large polyhedral nanocages and unbounded straight ‘train track’ assemblies with reconfigurable sizes and geometries that can be readily blueprinted. Because of the complexity of protein structures and sequence–structure relationships, it has not previously been possible to build up large protein assemblies by deliberate placement of protein backbones onto a blank three-dimensional canvas; the simplicity and geometric regularity of our design platform now enables construction of protein nanomaterials according to ‘back of an envelope’ architectural blueprints.

Suggested Citation

  • Timothy F. Huddy & Yang Hsia & Ryan D. Kibler & Jinwei Xu & Neville Bethel & Deepesh Nagarajan & Rachel Redler & Philip J. Y. Leung & Connor Weidle & Alexis Courbet & Erin C. Yang & Asim K. Bera & Nic, 2024. "Blueprinting extendable nanomaterials with standardized protein blocks," Nature, Nature, vol. 627(8005), pages 898-904, March.
  • Handle: RePEc:nat:nature:v:627:y:2024:i:8005:d:10.1038_s41586-024-07188-4
    DOI: 10.1038/s41586-024-07188-4
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