IDEAS home Printed from https://ideas.repec.org/a/nat/nature/v615y2023i7954d10.1038_s41586-023-05863-6.html
   My bibliography  Save this article

Ultrafast structural changes direct the first molecular events of vision

Author

Listed:
  • Thomas Gruhl

    (Paul Scherrer Institute)

  • Tobias Weinert

    (Paul Scherrer Institute)

  • Matthew J. Rodrigues

    (Paul Scherrer Institute)

  • Christopher J. Milne

    (Paul Scherrer Institute
    European XFEL)

  • Giorgia Ortolani

    (University of Gothenburg)

  • Karol Nass

    (Paul Scherrer Institute)

  • Eriko Nango

    (Tohoku University
    RIKEN SPring-8 Center)

  • Saumik Sen

    (Paul Scherrer Institute
    Swiss Institute of Bioinformatics (SIB))

  • Philip J. M. Johnson

    (Paul Scherrer Institute)

  • Claudio Cirelli

    (Paul Scherrer Institute)

  • Antonia Furrer

    (Paul Scherrer Institute
    Novartis Institutes for Biomedical Research)

  • Sandra Mous

    (ETH Zurich
    SLAC National Accelerator Laboratory)

  • Petr Skopintsev

    (Paul Scherrer Institute
    University of California)

  • Daniel James

    (Paul Scherrer Institute
    Utah Valley University)

  • Florian Dworkowski

    (Paul Scherrer Institute)

  • Petra Båth

    (University of Gothenburg)

  • Demet Kekilli

    (Paul Scherrer Institute)

  • Dmitry Ozerov

    (Paul Scherrer Institute)

  • Rie Tanaka

    (RIKEN SPring-8 Center
    Kyoto University)

  • Hannah Glover

    (Paul Scherrer Institute)

  • Camila Bacellar

    (Paul Scherrer Institute)

  • Steffen Brünle

    (Paul Scherrer Institute
    Leiden University)

  • Cecilia M. Casadei

    (ETH Zurich)

  • Azeglio D. Diethelm

    (Paul Scherrer Institute)

  • Dardan Gashi

    (Paul Scherrer Institute)

  • Guillaume Gotthard

    (Paul Scherrer Institute
    ETH Zurich)

  • Ramon Guixà-González

    (Paul Scherrer Institute
    Swiss Institute of Bioinformatics (SIB))

  • Yasumasa Joti

    (Japan Synchrotron Radiation Research Institute)

  • Victoria Kabanova

    (Paul Scherrer Institute
    École Polytechnique Fédérale de Lausanne)

  • Gregor Knopp

    (Paul Scherrer Institute)

  • Elena Lesca

    (ETH Zurich)

  • Pikyee Ma

    (Paul Scherrer Institute)

  • Isabelle Martiel

    (Paul Scherrer Institute)

  • Jonas Mühle

    (Paul Scherrer Institute)

  • Shigeki Owada

    (RIKEN SPring-8 Center
    Japan Synchrotron Radiation Research Institute)

  • Filip Pamula

    (Paul Scherrer Institute
    Aarhus University)

  • Daniel Sarabi

    (University of Gothenburg)

  • Oliver Tejero

    (Paul Scherrer Institute)

  • Ching-Ju Tsai

    (Paul Scherrer Institute)

  • Niranjan Varma

    (Paul Scherrer Institute)

  • Anna Wach

    (Institute of Nuclear Physics Polish Academy of Sciences
    Paul Scherrer Institute)

  • Sébastien Boutet

    (SLAC National Accelerator Laboratory)

  • Kensuke Tono

    (Japan Synchrotron Radiation Research Institute)

  • Przemyslaw Nogly

    (ETH Zurich
    Jagiellonian University in Kraków)

  • Xavier Deupi

    (Paul Scherrer Institute
    Paul Scherrer Institute
    Swiss Institute of Bioinformatics (SIB))

  • So Iwata

    (RIKEN SPring-8 Center
    Kyoto University)

  • Richard Neutze

    (University of Gothenburg)

  • Jörg Standfuss

    (Paul Scherrer Institute)

  • Gebhard Schertler

    (Paul Scherrer Institute
    ETH Zurich)

  • Valerie Panneels

    (Paul Scherrer Institute)

Abstract

Vision is initiated by the rhodopsin family of light-sensitive G protein-coupled receptors (GPCRs)1. A photon is absorbed by the 11-cis retinal chromophore of rhodopsin, which isomerizes within 200 femtoseconds to the all-trans conformation2, thereby initiating the cellular signal transduction processes that ultimately lead to vision. However, the intramolecular mechanism by which the photoactivated retinal induces the activation events inside rhodopsin remains experimentally unclear. Here we use ultrafast time-resolved crystallography at room temperature3 to determine how an isomerized twisted all-trans retinal stores the photon energy that is required to initiate the protein conformational changes associated with the formation of the G protein-binding signalling state. The distorted retinal at a 1-ps time delay after photoactivation has pulled away from half of its numerous interactions with its binding pocket, and the excess of the photon energy is released through an anisotropic protein breathing motion in the direction of the extracellular space. Notably, the very early structural motions in the protein side chains of rhodopsin appear in regions that are involved in later stages of the conserved class A GPCR activation mechanism. Our study sheds light on the earliest stages of vision in vertebrates and points to fundamental aspects of the molecular mechanisms of agonist-mediated GPCR activation.

Suggested Citation

  • Thomas Gruhl & Tobias Weinert & Matthew J. Rodrigues & Christopher J. Milne & Giorgia Ortolani & Karol Nass & Eriko Nango & Saumik Sen & Philip J. M. Johnson & Claudio Cirelli & Antonia Furrer & Sandr, 2023. "Ultrafast structural changes direct the first molecular events of vision," Nature, Nature, vol. 615(7954), pages 939-944, March.
  • Handle: RePEc:nat:nature:v:615:y:2023:i:7954:d:10.1038_s41586-023-05863-6
    DOI: 10.1038/s41586-023-05863-6
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41586-023-05863-6
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1038/s41586-023-05863-6?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:nature:v:615:y:2023:i:7954:d:10.1038_s41586-023-05863-6. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.