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Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products

Author

Listed:
  • Bo Zhang

    (Nanjing University)

  • Kai Biao Wang

    (Nanjing University)

  • Wen Wang

    (Nanjing University)

  • Xin Wang

    (Nanjing University)

  • Fang Liu

    (Nanjing University)

  • Jiapeng Zhu

    (Nanjing University of Chinese Medicine)

  • Jing Shi

    (Nanjing University)

  • Ling Yu Li

    (Nanjing University)

  • Hao Han

    (Nanjing University)

  • Kuang Xu

    (Nanjing University)

  • Hong Yun Qiao

    (Nanjing University)

  • Xiao Zhang

    (Nanjing University)

  • Rui Hua Jiao

    (Nanjing University)

  • Kendall N. Houk

    (University of California, Los Angeles)

  • Yong Liang

    (Nanjing University)

  • Ren Xiang Tan

    (Nanjing University
    Nanjing University of Chinese Medicine)

  • Hui Ming Ge

    (Nanjing University)

Abstract

Pericyclic reactions are powerful transformations for the construction of carbon–carbon and carbon–heteroatom bonds in organic synthesis. Their role in biosynthesis is increasingly apparent, and mechanisms by which pericyclases can catalyse reactions are of major interest1. [4+2] cycloadditions (Diels–Alder reactions) have been widely used in organic synthesis2 for the formation of six-membered rings and are now well-established in biosynthesis3–6. [6+4] and other ‘higher-order’ cycloadditions were predicted7 in 1965, and are now increasingly common in the laboratory despite challenges arising from the generation of a highly strained ten-membered ring system8,9. However, although enzyme-catalysed [6+4] cycloadditions have been proposed10–12, they have not been proven to occur. Here we demonstrate a group of enzymes that catalyse a pericyclic [6+4] cycloaddition, which is a crucial step in the biosynthesis of streptoseomycin-type natural products. This type of pericyclase catalyses [6+4] and [4+2] cycloadditions through a single ambimodal transition state, which is consistent with previous proposals11,12. The [6+4] product is transformed to a less stable [4+2] adduct via a facile Cope rearrangement, and the [4+2] adduct is converted into the natural product enzymatically. Crystal structures of three pericyclases, computational simulations of potential energies and molecular dynamics, and site-directed mutagenesis establish the mechanism of this transformation. This work shows how enzymes are able to catalyse concerted pericyclic reactions involving ambimodal transition states.

Suggested Citation

  • Bo Zhang & Kai Biao Wang & Wen Wang & Xin Wang & Fang Liu & Jiapeng Zhu & Jing Shi & Ling Yu Li & Hao Han & Kuang Xu & Hong Yun Qiao & Xiao Zhang & Rui Hua Jiao & Kendall N. Houk & Yong Liang & Ren Xi, 2019. "Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products," Nature, Nature, vol. 568(7750), pages 122-126, April.
  • Handle: RePEc:nat:nature:v:568:y:2019:i:7750:d:10.1038_s41586-019-1021-x
    DOI: 10.1038/s41586-019-1021-x
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