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Author Correction: Discovery of stimulation-responsive immune enhancers with CRISPR activation

Author

Listed:
  • Dimitre R. Simeonov

    (University of California
    University of California
    Diabetes Center, University of California
    University of California)

  • Benjamin G. Gowen

    (University of California
    University of California, Berkeley)

  • Mandy Boontanrart

    (University of California
    University of California, Berkeley)

  • Theodore L. Roth

    (University of California
    University of California
    Diabetes Center, University of California
    University of California)

  • John D. Gagnon

    (University of California
    University of California
    University of California)

  • Maxwell R. Mumbach

    (Stanford University School of Medicine
    Stanford University School of Medicine
    Stanford University School of Medicine)

  • Ansuman T. Satpathy

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Youjin Lee

    (University of California
    Diabetes Center, University of California
    University of California)

  • Nicolas L. Bray

    (University of California
    University of California, Berkeley)

  • Alice Y. Chan

    (Diabetes Center, University of California
    University of California)

  • Dmytro S. Lituiev

    (University of California)

  • Michelle L. Nguyen

    (University of California
    Diabetes Center, University of California
    University of California)

  • Rachel E. Gate

    (University of California
    University of California)

  • Meena Subramaniam

    (University of California
    University of California)

  • Zhongmei Li

    (University of California
    Diabetes Center, University of California
    University of California)

  • Jonathan M. Woo

    (University of California
    Diabetes Center, University of California
    University of California)

  • Therese Mitros

    (University of California
    University of California, Berkeley)

  • Graham J. Ray

    (University of California
    University of California, Berkeley)

  • Gemma L. Curie

    (University of California
    University of California, Berkeley)

  • Nicki Naddaf

    (University of California
    University of California, Berkeley)

  • Julia S. Chu

    (University of California
    University of California, Berkeley)

  • Hong Ma

    (University of California
    University of California, Berkeley)

  • Eric Boyer

    (Diabetes Center, University of California
    University of California)

  • Frederic Gool

    (Diabetes Center, University of California)

  • Hailiang Huang

    (Broad Institute of MIT and Harvard
    Harvard Medical School)

  • Ruize Liu

    (Broad Institute of MIT and Harvard
    Harvard Medical School)

  • Victoria R. Tobin

    (University of California
    Diabetes Center, University of California
    University of California)

  • Kathrin Schumann

    (University of California
    Diabetes Center, University of California
    University of California)

  • Mark J. Daly

    (Broad Institute of MIT and Harvard
    Harvard Medical School)

  • Kyle K. Farh

    (Illumina Inc., 5200 Illumina Way)

  • K. Mark Ansel

    (University of California
    University of California)

  • Chun J. Ye

    (University of California)

  • William J. Greenleaf

    (Stanford University School of Medicine
    Stanford University School of Medicine
    Stanford University
    Chan Zuckerberg Biohub)

  • Mark S. Anderson

    (Diabetes Center, University of California
    University of California)

  • Jeffrey A. Bluestone

    (Diabetes Center, University of California)

  • Howard Y. Chang

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Jacob E. Corn

    (University of California
    University of California, Berkeley)

  • Alexander Marson

    (University of California
    Diabetes Center, University of California
    University of California
    Chan Zuckerberg Biohub)

Abstract

In this Letter, analysis of steady-state regulatory T (Treg) cell percentages from Il2ra enhancer deletion (EDEL) and wild-type (WT) mice revealed no differences between them (Extended Data Fig. 9d). This analysis included two mice whose genotypes were incorrectly assigned. Even after correction of the genotypes, no significant differences in Treg cell percentages were seen when data across experimental cohorts were averaged (as was done in Extended Data Fig. 9d). However, if we normalize the corrected data to account for variation among experimental cohorts, a subtle decrease in EDEL Treg cell percentages is revealed and, using the corrected and normalized data, we have redrawn Extended Data Fig. 9d in Supplementary Fig. 1. The Supplementary Information to this Amendment contains the corrected and reanalysed Extended Data Fig. 9d. The sentence “This enhancer deletion (EDEL) strain also had no obvious T cell phenotypes at steady state (Extended Data Fig. 9).” should read: “This enhancer deletion (EDEL) strain had a small decrease in the percentage of Treg cells (Extended Data Fig. 9).”. This error does not affect any of the main figures in the Letter or the data from mice with the human autoimmune-associated single nucleotide polymorphism (SNP) knocked in or with a 12-base-pair deletion at the site (12DEL). In addition, we stated in the Methods that we observed consistent immunophenotypes of EDEL mice across three founders, but in fact, we observed consistent phenotypes in mice from two founders. This does not change any of our conclusions and the original Letter has not been corrected.

Suggested Citation

  • Dimitre R. Simeonov & Benjamin G. Gowen & Mandy Boontanrart & Theodore L. Roth & John D. Gagnon & Maxwell R. Mumbach & Ansuman T. Satpathy & Youjin Lee & Nicolas L. Bray & Alice Y. Chan & Dmytro S. Li, 2018. "Author Correction: Discovery of stimulation-responsive immune enhancers with CRISPR activation," Nature, Nature, vol. 559(7715), pages 13-13, July.
  • Handle: RePEc:nat:nature:v:559:y:2018:i:7715:d:10.1038_s41586-018-0227-7
    DOI: 10.1038/s41586-018-0227-7
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