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A comprehensive multiscale framework for simulating optogenetics in the heart

Author

Listed:
  • Patrick M. Boyle

    (Institute for Computational Medicine, Johns Hopkins University)

  • John C. Williams

    (Institute for Molecular Cardiology, Stony Brook University)

  • Christina M. Ambrosi

    (Institute for Molecular Cardiology, Stony Brook University)

  • Emilia Entcheva

    (Institute for Molecular Cardiology, Stony Brook University)

  • Natalia A. Trayanova

    (Institute for Computational Medicine, Johns Hopkins University)

Abstract

Optogenetics has emerged as an alternative method for electrical control of the heart, where illumination is used to elicit a bioelectric response in tissue modified to express photosensitive proteins (opsins). This technology promises to enable evocation of spatiotemporally precise responses in targeted cells or tissues, thus creating new possibilities for safe and effective therapeutic approaches to ameliorate cardiac function. Here we present a comprehensive framework for multiscale modelling of cardiac optogenetics, allowing both mechanistic examination of optical control and exploration of potential therapeutic applications. The framework incorporates accurate representations of opsin channel kinetics and delivery modes, spatial distribution of photosensitive cells, and tissue illumination constraints, making possible the prediction of emergent behaviour resulting from interactions at sub-organ scales. We apply this framework to explore how optogenetic delivery characteristics determine energy requirements for optical stimulation and to identify cardiac structures that are potential pacemaking targets with low optical excitation thresholds.

Suggested Citation

  • Patrick M. Boyle & John C. Williams & Christina M. Ambrosi & Emilia Entcheva & Natalia A. Trayanova, 2013. "A comprehensive multiscale framework for simulating optogenetics in the heart," Nature Communications, Nature, vol. 4(1), pages 1-9, December.
    • Handle: RePEc:nat:natcom:v:4:y:2013:i:1:d:10.1038_ncomms3370
    DOI: 10.1038/ncomms3370
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