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Demethylation of methylguanidine by a stepwise dioxygenase and lyase reaction

Author

Listed:
  • Malte Sinn

    (University of Konstanz)

  • Dietmar Funck

    (University of Konstanz)

  • Felix Gamer

    (University of Konstanz)

  • Clemens Blumenthal

    (University of Konstanz)

  • Cecilia Kramp

    (University of Konstanz)

  • Jörg S. Hartig

    (University of Konstanz
    University of Konstanz)

Abstract

Guanidine-responsive riboswitches control genes that enable either detoxification or assimilation of guanidino compounds. In Vreelandella boliviensis and other halophilic bacteria, genes encoding the guanidine carboxylase pathway are found in a guanidine riboswitch-regulated operon, along with two uncharacterized genes annotated as 2-oxoglutarate (2-OG/Fe(II))-dependent dioxygenase family protein and hypothetical protein, respectively. Here we show that the 2-OG/Fe(II)-dependent dioxygenase efficiently hydroxylates methylguanidine. The resulting N-(hydroxymethyl)guanidine constitutes an unexpectedly stable hemiaminal that slowly decays to guanidine and formaldehyde. The second protein strongly accelerates the fragmentation of N-(hydroxymethyl)guanidine into guanidine and formaldehyde, thus acting as N-(hydroxymethyl)guanidine lyase. Interestingly, the class II guanidine riboswitch in front of the guanidine carboxylase gene does not discriminate between guanidine and methylguanidine, whereas the guanidine class I riboswitch at the start of the entire operon is specific for guanidine. V. boliviensis exhibits growth in minimal media with either guanidine or methylguanidine as sole nitrogen source. Comparative proteome analysis revealed that the entire guanidine carboxylase operon is strongly expressed under these conditions. The presented study broadens our understanding of guanidine metabolism by describing two enzymatic activities that jointly catalyze the demethylation of methylguanidine.

Suggested Citation

  • Malte Sinn & Dietmar Funck & Felix Gamer & Clemens Blumenthal & Cecilia Kramp & Jörg S. Hartig, 2025. "Demethylation of methylguanidine by a stepwise dioxygenase and lyase reaction," Nature Communications, Nature, vol. 16(1), pages 1-9, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-64776-2
    DOI: 10.1038/s41467-025-64776-2
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    References listed on IDEAS

    as
    1. M. Sinn & L. Riede & J. R. Fleming & D. Funck & H. Lutz & A. Bachmann & O. Mayans & J. S. Hartig, 2024. "Metformin hydrolase is a recently evolved nickel-dependent heteromeric ureohydrolase," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    2. Marton Palatinszky & Craig W. Herbold & Christopher J. Sedlacek & Dominic Pühringer & Katharina Kitzinger & Andrew T. Giguere & Kenneth Wasmund & Per H. Nielsen & Morten K. D. Dueholm & Nico Jehmlich , 2024. "Growth of complete ammonia oxidizers on guanidine," Nature, Nature, vol. 633(8030), pages 646-653, September.
    3. D. Funck & M. Sinn & J. R. Fleming & M. Stanoppi & J. Dietrich & R. López-Igual & O. Mayans & J. S. Hartig, 2022. "Discovery of a Ni2+-dependent guanidine hydrolase in bacteria," Nature, Nature, vol. 603(7901), pages 515-521, March.
    4. Bo Wang & Yao Xu & Xin Wang & Joshua S. Yuan & Carl H. Johnson & Jamey D. Young & Jianping Yu, 2021. "A guanidine-degrading enzyme controls genomic stability of ethylene-producing cyanobacteria," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    5. Chengqi Yi & Guifang Jia & Guanhua Hou & Qing Dai & Wen Zhang & Guanqun Zheng & Xing Jian & Cai-Guang Yang & Qiang Cui & Chuan He, 2010. "Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase," Nature, Nature, vol. 468(7321), pages 330-333, November.
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