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Buffer optimization of siRNA-lipid nanoparticles mitigates lipid oxidation and RNA-lipid adduct formation

Author

Listed:
  • Daniel A. Estabrook

    (Lilly Seaport Innovation Center)

  • Lihua Huang

    (Eli Lilly and Company)

  • Olivia R. Lucchese

    (Lilly Seaport Innovation Center)

  • Dylan J. Charland

    (Lilly Seaport Innovation Center)

  • Zhao Yu

    (Eli Lilly and Company)

  • Fareed Bhasha Sayyed

    (Eli Lilly Services India Pvt Ltd.)

  • Jonas Y. Buser

    (Eli Lilly and Company)

  • Younghoon Oh

    (Lilly Seaport Innovation Center)

  • Xingyan Liu

    (Lilly Seaport Innovation Center)

  • Harmon A. Johnson

    (Lilly Seaport Innovation Center)

  • Kenneth G. Rodriguez

    (Lilly Seaport Innovation Center)

  • Noah A. Wambolt

    (Eurofins Lancaster Laboratories Professional Scientific Services, LLC)

  • Sonia A. Corba

    (Eurofins Lancaster Laboratories Professional Scientific Services, LLC)

  • Geoffrey T. Nash

    (Eli Lilly and Company)

  • Dennis Yang

    (Eli Lilly and Company)

  • Tingting Wang

    (Eli Lilly and Company)

Abstract

Lipid nanoparticles are a versatile class of clinically approved drug delivery vehicles, particularly for nucleic acid cargoes. Despite this, these materials often suffer from instability issues that limit shelf-life or necessitate storage at ultra-cold temperatures. Herein, we demonstrate that the oxidation of unsaturated hydrocarbons within ionizable lipid tails results in the production of a dienone species that changes the conformation of the lipid tail and generates an electrophilic degradant that reacts with neighboring siRNA cargoes to produce siRNA-lipid adducts. This mechanism highlights the interplay between lipid degradation, colloidal instability, RNA-lipid adduct formation, and loss of bioactivity. In this work, we show that revised drug product matrixes, including mildly acidic, histidine-containing formulations, can improve room temperature stability of siRNA-lipid nanoparticles by mitigating these oxidative degradation mechanisms.

Suggested Citation

  • Daniel A. Estabrook & Lihua Huang & Olivia R. Lucchese & Dylan J. Charland & Zhao Yu & Fareed Bhasha Sayyed & Jonas Y. Buser & Younghoon Oh & Xingyan Liu & Harmon A. Johnson & Kenneth G. Rodriguez & N, 2025. "Buffer optimization of siRNA-lipid nanoparticles mitigates lipid oxidation and RNA-lipid adduct formation," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63651-4
    DOI: 10.1038/s41467-025-63651-4
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