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Recapitulating dengue virus infection with human pluripotent stem cell-derived liver organoids for antiviral screening

Author

Listed:
  • Meng-Qi Li

    (Academy of Military Medical Sciences)

  • Yan-Peng Xu

    (Capital Medical University, Capital Institute of Pediatrics)

  • Kai Li

    (Academy of Military Medical Sciences)

  • Chao Zhou

    (Academy of Military Medical Sciences)

  • Xiao-Xuan Fan

    (Academy of Military Medical Sciences)

  • Hui Wang

    (Academy of Military Medical Sciences)

  • Pan-Deng Shi

    (Academy of Military Medical Sciences)

  • Rui-Ting Li

    (Academy of Military Medical Sciences)

  • Zu-Xin Wang

    (Academy of Military Medical Sciences)

  • Tian-Shu Cao

    (Academy of Military Medical Sciences)

  • Qi Chen

    (Academy of Military Medical Sciences)

  • Yu-Jun Cui

    (Academy of Military Medical Sciences)

  • Yong-Qiang Deng

    (Academy of Military Medical Sciences)

  • Xiao-Yan Wu

    (Academy of Military Medical Sciences)

  • Hui Zhao

    (Academy of Military Medical Sciences)

  • Cheng-Feng Qin

    (Academy of Military Medical Sciences
    Chinese Academy of Medical Sciences)

Abstract

Dengue virus (DENV) poses a major global health threat, affecting an estimated 100 to 400 million people annually. The infection and pathogenesis remain incompletely understood, and no antiviral drug is currently approved for DENV treatment. Here, we develop a human pluripotent stem cell (hPSC)-derived liver organoid (hPLO) model to characterize DENV infection and screen for antivirals. The hPLOs, containing various liver cell types, are highly susceptible to DENV-2 infection, resulting in severe cell death and morphological changes that mimic the pathology observed in severe dengue cases. Single-cell RNA sequencing (scRNA-seq) of DENV-2 infected hPLOs reveals that proliferating hepatocyte-like cells are the primary target cells of DENV-2, with significant mitochondrial damage and alterations in cell-type composition. Further drug screening in hPLOs identifies oxyresveratrol (Oresveratrol, ORES) and omaveloxolone (RTA 408) as potent anti-DENV candidates. These compounds enhance resistance to DENV-2 infection by activating the NRF2 pathway, reducing oxidative stress, and preserving mitochondrial function. The efficacy of ORES and RTA 408 is further validated in the established AG6 mouse model. Our study not only establishes hPLOs as a valuable platform for studying DENV infection and pathogenesis, but also highlights the vital role of NRF2-mediated mitochondrial function for antiviral development.

Suggested Citation

  • Meng-Qi Li & Yan-Peng Xu & Kai Li & Chao Zhou & Xiao-Xuan Fan & Hui Wang & Pan-Deng Shi & Rui-Ting Li & Zu-Xin Wang & Tian-Shu Cao & Qi Chen & Yu-Jun Cui & Yong-Qiang Deng & Xiao-Yan Wu & Hui Zhao & C, 2025. "Recapitulating dengue virus infection with human pluripotent stem cell-derived liver organoids for antiviral screening," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63323-3
    DOI: 10.1038/s41467-025-63323-3
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    1. John W. Schoggins & Sam J. Wilson & Maryline Panis & Mary Y. Murphy & Christopher T. Jones & Paul Bieniasz & Charles M. Rice, 2011. "A diverse range of gene products are effectors of the type I interferon antiviral response," Nature, Nature, vol. 472(7344), pages 481-485, April.
    2. Wenliang Zhu & Boya Zhang & Mengqi Li & Fan Mo & Tingwei Mi & Yihui Wu & Zhaoqian Teng & Qi Zhou & Wei Li & Baoyang Hu, 2019. "Precisely controlling endogenous protein dosage in hPSCs and derivatives to model FOXG1 syndrome," Nature Communications, Nature, vol. 10(1), pages 1-18, December.
    3. Wei Yang & Li-Bo Liu & Feng-Liang Liu & Yan-Hua Wu & Zi-Da Zhen & Dong-Ying Fan & Zi-Yang Sheng & Zheng-Ran Song & Jia-Tong Chang & Yong-Tang Zheng & Jing An & Pei-Gang Wang, 2023. "Single-cell RNA sequencing reveals the fragility of male spermatogenic cells to Zika virus-induced complement activation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    4. Hao Wu & Xing-Yao Huang & Meng-Xu Sun & Yue Wang & Hang-Yu Zhou & Ying Tian & Beijia He & Kai Li & De-Yu Li & Ai-Ping Wu & Hongmei Wang & Cheng-Feng Qin, 2023. "Zika virus targets human trophoblast stem cells and prevents syncytialization in placental trophoblast organoids," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    5. Erica Carolina & Yoshiki Kuse & Ayumu Okumura & Kenji Aoshima & Tomomi Tadokoro & Shinya Matsumoto & Eriko Kanai & Takashi Okumura & Toshiharu Kasai & Souichiro Yamabe & Yuji Nishikawa & Kiyoshi Yamag, 2024. "Generation of human iPSC-derived 3D bile duct within liver organoid by incorporating human iPSC-derived blood vessel," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    6. Alexander Raven & Wei-Yu Lu & Tak Yung Man & Sofia Ferreira-Gonzalez & Eoghan O’Duibhir & Benjamin J. Dwyer & John P. Thomson & Richard R. Meehan & Roman Bogorad & Victor Koteliansky & Yuri Kotelevtse, 2017. "Cholangiocytes act as facultative liver stem cells during impaired hepatocyte regeneration," Nature, Nature, vol. 547(7663), pages 350-354, July.
    7. Samir Bhatt & Peter W. Gething & Oliver J. Brady & Jane P. Messina & Andrew W. Farlow & Catherine L. Moyes & John M. Drake & John S. Brownstein & Anne G. Hoen & Osman Sankoh & Monica F. Myers & Dylan , 2013. "The global distribution and burden of dengue," Nature, Nature, vol. 496(7446), pages 504-507, April.
    8. Caleb A. Lareau & Yajie Yin & Katie Maurer & Katalin D. Sandor & Bence Daniel & Garima Yagnik & José Peña & Jeremy Chase Crawford & Anne M. Spanjaart & Jacob C. Gutierrez & Nicholas J. Haradhvala & Ja, 2023. "Latent human herpesvirus 6 is reactivated in CAR T cells," Nature, Nature, vol. 623(7987), pages 608-615, November.
    9. Yong Tao & Veronica Lamas & Wan Du & Wenliang Zhu & Yiran Li & Madelynn N. Whittaker & John A. Zuris & David B. Thompson & Arun Prabhu Rameshbabu & Yilai Shu & Xue Gao & Johnny H. Hu & Charles Pei & W, 2023. "Treatment of monogenic and digenic dominant genetic hearing loss by CRISPR-Cas9 ribonucleoprotein delivery in vivo," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    10. Smriti Mallapaty, 2024. "The pathogens that could spark the next pandemic," Nature, Nature, vol. 632(8025), pages 488-488, August.
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