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Hypoxic stress incites HIF1α-driven ribosome biogenesis that can be exploited by targeting RNA Polymerase I

Author

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  • Amr Elhamamsy

    (University of Alabama at Birmingham)

  • Brandon J. Metge

    (University of Alabama at Birmingham)

  • Courtney A. Swain

    (University of Alabama at Birmingham)

  • Mohamed H. Elbahoty

    (University of Alabama at Birmingham)

  • Dominique C. Hinshaw

    (University of Alabama at Birmingham)

  • Sarah C. Kammerud

    (University of Alabama at Birmingham)

  • Dongquan Chen

    (University of Alabama at Birmingham
    University of Alabama at Birmingham)

  • Rajeev S. Samant

    (University of Alabama at Birmingham
    University of Alabama at Birmingham
    Birmingham VA Medical Center)

  • Lalita A. Shevde

    (University of Alabama at Birmingham
    University of Alabama at Birmingham)

Abstract

Intratumoral low oxygen tension promotes cancer cell invasion and metastasis. Hypoxia-Inducible Factor 1-alpha (HIF1α) is the principal transcription factor orchestrating cellular responses to hypoxic stress, mediating the regulation of genes implicated in adapting to perturbations in oxygen homeostasis. Here, we describe our findings that functionally demonstrate a nucleolar localization domain in HIF1ɑ that enables HIF1ɑ to translocate to the nucleolus. Nucleolar HIF1ɑ binds the ribosomal DNA promoter and upregulates RNA Polymerase I activity leading to dysregulated ribosomal RNA transcription and consequently enhanced ribosome biogenesis. Ribosome biogenesis is important in supporting cellular metabolic processes and invasion and metastasis. Our findings are recapitulated in breast tumors wherein upregulated HIF1ɑ and rRNA biogenesis are associated with poor prognosis. Finally, our studies demonstrate that inhibition of RNA Polymerase I impedes aggressive traits of hypoxia-driven cancer progression, highlighting the potential of this approach as a therapeutic strategy in breast cancer. Cumulatively our work unravels an unprecedented role of HIF1ɑ in regulating rRNA biogenesis in breast cancer.

Suggested Citation

  • Amr Elhamamsy & Brandon J. Metge & Courtney A. Swain & Mohamed H. Elbahoty & Dominique C. Hinshaw & Sarah C. Kammerud & Dongquan Chen & Rajeev S. Samant & Lalita A. Shevde, 2025. "Hypoxic stress incites HIF1α-driven ribosome biogenesis that can be exploited by targeting RNA Polymerase I," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63315-3
    DOI: 10.1038/s41467-025-63315-3
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    References listed on IDEAS

    as
    1. Alexander Lachmann & Denis Torre & Alexandra B. Keenan & Kathleen M. Jagodnik & Hoyjin J. Lee & Lily Wang & Moshe C. Silverstein & Avi Ma’ayan, 2018. "Massive mining of publicly available RNA-seq data from human and mouse," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    2. Varsha Prakash & Brittany B. Carson & Jennifer M. Feenstra & Randall A. Dass & Petra Sekyrova & Ayuko Hoshino & Julian Petersen & Yuan Guo & Matthew M. Parks & Chad M. Kurylo & Jake E. Batchelder & Kr, 2019. "Ribosome biogenesis during cell cycle arrest fuels EMT in development and disease," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
    3. Diana M. Mitrea & Jaclyn A. Cika & Christopher B. Stanley & Amanda Nourse & Paulo L. Onuchic & Priya R. Banerjee & Aaron H. Phillips & Cheon-Gil Park & Ashok A. Deniz & Richard W. Kriwacki, 2018. "Self-interaction of NPM1 modulates multiple mechanisms of liquid–liquid phase separation," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
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