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Probing weak chemical interactions of metal surface atoms with CO-terminated AFM tips identifies molecular adsorption sites

Author

Listed:
  • Jalmar Tschakert

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • Qigang Zhong

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • Alexander Sekels

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • Pascal Henkel

    (Justus Liebig University Giessen
    Justus Liebig University Giessen
    Aalto University)

  • Jannis Jung

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • K. Linus H. Pohl

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • Hermann A. Wegner

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • Doreen Mollenhauer

    (Justus Liebig University Giessen
    Justus Liebig University Giessen
    Friedrich Schiller University Jena
    Helmholtz Institute for Polymers in Energy Applications Jena (HIPOLE Jena))

  • André Schirmeisen

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

  • Daniel Ebeling

    (Justus Liebig University Giessen
    Justus Liebig University Giessen)

Abstract

Metal surfaces play a key role in on-surface synthesis as they provide a two-dimensional catalytic reaction environment that stimulates activation, diffusion, and coupling of molecular reactants. Fundamental understanding of the interactions between surface atoms and reactants is very limited but would enable controlling on-surface reaction processes for designing functional nanomaterials. Here, we measure chemical interactions between CO-terminated tips and Cu(111), Ag(111), and Au(111) surface atoms in all spatial directions with picometer resolution via low temperature atomic force microscopy. This allows a site-specific quantification of the weak chemical interactions of densely packed metal surface atoms and provides a picture of the potential energy landscape experienced by adsorbed reactants. Accompanying density functional theory calculations and the crystal orbital overlap population method reveal small covalent binding contributions from orbital overlap of the corresponding p- and d-states of the CO tip and the metal surface atoms as the cause for the site-specific interactions. Accessing such small covalent bonding contributions in the background of the dispersion-dominated interaction enables revealing insights into the nature of chemical bond formation with metal surface atoms and a reliable determination of molecular adsorption sites. The latter can serve both as a starting point and as a direct comparison with theoretical studies.

Suggested Citation

  • Jalmar Tschakert & Qigang Zhong & Alexander Sekels & Pascal Henkel & Jannis Jung & K. Linus H. Pohl & Hermann A. Wegner & Doreen Mollenhauer & André Schirmeisen & Daniel Ebeling, 2025. "Probing weak chemical interactions of metal surface atoms with CO-terminated AFM tips identifies molecular adsorption sites," Nature Communications, Nature, vol. 16(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63159-x
    DOI: 10.1038/s41467-025-63159-x
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    References listed on IDEAS

    as
    1. Daniel Ebeling & Marina Šekutor & Marvin Stiefermann & Jalmar Tschakert & Jeremy E. P. Dahl & Robert M. K. Carlson & André Schirmeisen & Peter R. Schreiner, 2018. "Assigning the absolute configuration of single aliphatic molecules by visual inspection," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
    2. Shantanu Mishra & Gonçalo Catarina & Fupeng Wu & Ricardo Ortiz & David Jacob & Kristjan Eimre & Ji Ma & Carlo A. Pignedoli & Xinliang Feng & Pascal Ruffieux & Joaquín Fernández-Rossier & Roman Fasel, 2021. "Publisher Correction: Observation of fractional edge excitations in nanographene spin chains," Nature, Nature, vol. 599(7885), pages 6-6, November.
    3. Shantanu Mishra & Gonçalo Catarina & Fupeng Wu & Ricardo Ortiz & David Jacob & Kristjan Eimre & Ji Ma & Carlo A. Pignedoli & Xinliang Feng & Pascal Ruffieux & Joaquín Fernández-Rossier & Roman Fasel, 2021. "Observation of fractional edge excitations in nanographene spin chains," Nature, Nature, vol. 598(7880), pages 287-292, October.
    4. Qigang Zhong & Daniel Ebeling & Jalmar Tschakert & Yixuan Gao & Deliang Bao & Shixuan Du & Chen Li & Lifeng Chi & André Schirmeisen, 2018. "Symmetry breakdown of 4,4″-diamino-p-terphenyl on a Cu(111) surface by lattice mismatch," Nature Communications, Nature, vol. 9(1), pages 1-7, December.
    5. Shigeki Kawai & Adam S. Foster & Torbjörn Björkman & Sylwia Nowakowska & Jonas Björk & Filippo Federici Canova & Lutz H. Gade & Thomas A. Jung & Ernst Meyer, 2016. "Van der Waals interactions and the limits of isolated atom models at interfaces," Nature Communications, Nature, vol. 7(1), pages 1-7, September.
    6. Hatem Labidi & Mohammad Koleini & Taleana Huff & Mark Salomons & Martin Cloutier & Jason Pitters & Robert A. Wolkow, 2017. "Indications of chemical bond contrast in AFM images of a hydrogen-terminated silicon surface," Nature Communications, Nature, vol. 8(1), pages 1-7, April.
    7. Jalmar Tschakert & Qigang Zhong & Daniel Martin-Jimenez & Jaime Carracedo-Cosme & Carlos Romero-Muñiz & Pascal Henkel & Tobias Schlöder & Sebastian Ahles & Doreen Mollenhauer & Hermann A. Wegner & Pab, 2020. "Surface-controlled reversal of the selectivity of halogen bonds," Nature Communications, Nature, vol. 11(1), pages 1-8, December.
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