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A foundation model for human-AI collaboration in medical literature mining

Author

Listed:
  • Zifeng Wang

    (Keiji AI)

  • Lang Cao

    (University of Illinois Urbana-Champaign)

  • Qiao Jin

    (National Institutes of Health)

  • Joey Chan

    (National Institutes of Health)

  • Nicholas Wan

    (National Institutes of Health)

  • Behdad Afzali

    (National Institutes of Health)

  • Hyun-Jin Cho

    (Massachusetts General Hospital and Harvard Medical School)

  • Chang-In Choi

    (Massachusetts General Hospital and Harvard Medical School)

  • Mehdi Emamverdi

    (National Institutes of Health)

  • Manjot K. Gill

    (Northwestern University Feinberg School of Medicine)

  • Sun-Hyung Kim

    (Massachusetts General Hospital and Harvard Medical School
    Chungbuk National University College of Medicine)

  • Yijia Li

    (University of Pittsburgh Medical Center)

  • Yi Liu

    (Weill Cornell Medicine)

  • Yiming Luo

    (Columbia University Irving Medical Center)

  • Hanley Ong

    (Weill Cornell Medicine)

  • Justin F. Rousseau

    (UT Southwestern Medical Center
    University of Texas Southwestern Medical Center)

  • Irfan Sheikh

    (UT Southwestern Medical Center)

  • Jenny J. Wei

    (University of Washington)

  • Ziyang Xu

    (NYU Langone Health)

  • Christopher M. Zallek

    (OSF HealthCare Illinois Neurological Institute)

  • Kyungsang Kim

    (Massachusetts General Hospital and Harvard Medical School)

  • Yifan Peng

    (Weill Cornell Medicine
    Weill Cornell Medicine
    Weill Cornell Medicine)

  • Zhiyong Lu

    (National Institutes of Health)

  • Jimeng Sun

    (Keiji AI
    University of Illinois Urbana-Champaign
    University of Illinois Urbana-Champaign)

Abstract

Applying artificial intelligence (AI) for systematic literature review holds great potential for enhancing evidence-based medicine, yet has been limited by insufficient training and evaluation. Here, we present LEADS, an AI foundation model trained on 633,759 samples curated from 21,335 systematic reviews, 453,625 clinical trial publications, and 27,015 clinical trial registries. In experiments, LEADS demonstrates consistent improvements over four cutting-edge large language models (LLMs) on six literature mining tasks, e.g., study search, screening, and data extraction. We conduct a user study with 16 clinicians and researchers from 14 institutions to assess the utility of LEADS integrated into the expert workflow. In study selection, experts using LEADS achieve 0.81 recall vs. 0.78 without, saving 20.8% time. For data extraction, accuracy reached 0.85 vs. 0.80, with 26.9% time savings. These findings encourage future work on leveraging high-quality domain data to build specialized LLMs that outperform generic models and enhance expert productivity in literature mining.

Suggested Citation

  • Zifeng Wang & Lang Cao & Qiao Jin & Joey Chan & Nicholas Wan & Behdad Afzali & Hyun-Jin Cho & Chang-In Choi & Mehdi Emamverdi & Manjot K. Gill & Sun-Hyung Kim & Yijia Li & Yi Liu & Yiming Luo & Hanley, 2025. "A foundation model for human-AI collaboration in medical literature mining," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-62058-5
    DOI: 10.1038/s41467-025-62058-5
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    References listed on IDEAS

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    1. Lavender Yao Jiang & Xujin Chris Liu & Nima Pour Nejatian & Mustafa Nasir-Moin & Duo Wang & Anas Abidin & Kevin Eaton & Howard Antony Riina & Ilya Laufer & Paawan Punjabi & Madeline Miceli & Nora C. K, 2023. "Health system-scale language models are all-purpose prediction engines," Nature, Nature, vol. 619(7969), pages 357-362, July.
    2. Michael Moor & Oishi Banerjee & Zahra Shakeri Hossein Abad & Harlan M. Krumholz & Jure Leskovec & Eric J. Topol & Pranav Rajpurkar, 2023. "Foundation models for generalist medical artificial intelligence," Nature, Nature, vol. 616(7956), pages 259-265, April.
    3. Matthew J Page & Joanne E McKenzie & Patrick M Bossuyt & Isabelle Boutron & Tammy C Hoffmann & Cynthia D Mulrow & Larissa Shamseer & Jennifer M Tetzlaff & Elie A Akl & Sue E Brennan & Roger Chou & Jul, 2021. "The PRISMA 2020 statement: An updated guideline for reporting systematic reviews," PLOS Medicine, Public Library of Science, vol. 18(3), pages 1-15, March.
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