Current practices in the study of biomolecular condensates: a community comment
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-025-62055-8
Download full text from publisher
References listed on IDEAS
- Miao Yu & Maziar Heidari & Sofya Mikhaleva & Piau Siong Tan & Sara Mingu & Hao Ruan & Christopher D. Reinkemeier & Agnieszka Obarska-Kosinska & Marc Siggel & Martin Beck & Gerhard Hummer & Edward A. L, 2023. "Visualizing the disordered nuclear transport machinery in situ," Nature, Nature, vol. 617(7959), pages 162-169, May.
- Fleurie M. Kelley & Anas Ani & Emily G. Pinlac & Bridget Linders & Bruna Favetta & Mayur Barai & Yuchen Ma & Arjun Singh & Gregory L. Dignon & Yuwei Gu & Benjamin S. Schuster, 2025. "Controlled and orthogonal partitioning of large particles into biomolecular condensates," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
- Eszter E. Najbauer & Sheung Chun Ng & Christian Griesinger & Dirk Görlich & Loren B. Andreas, 2022. "Atomic resolution dynamics of cohesive interactions in phase-separated Nup98 FG domains," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Peter Eastman & Jason Swails & John D Chodera & Robert T McGibbon & Yutong Zhao & Kyle A Beauchamp & Lee-Ping Wang & Andrew C Simmonett & Matthew P Harrigan & Chaya D Stern & Rafal P Wiewiora & Bernar, 2017. "OpenMM 7: Rapid development of high performance algorithms for molecular dynamics," PLOS Computational Biology, Public Library of Science, vol. 13(7), pages 1-17, July.
- Ashish Joshi & Anuja Walimbe & Snehasis Sarkar & Lisha Arora & Gaganpreet Kaur & Prince Jhandai & Dhruba Chatterjee & Indranil Banerjee & Samrat Mukhopadhyay, 2024. "Intermolecular energy migration via homoFRET captures the modulation in the material property of phase-separated biomolecular condensates," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Y Hoang & Christopher A. Azaldegui & Rachel E. Dow & Maria Ghalmi & Julie S. Biteen & Anthony G. Vecchiarelli, 2024. "An experimental framework to assess biomolecular condensates in bacteria," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Agustín Mangiarotti & Elias Sabri & Kita Valerie Schmidt & Christian Hoffmann & Dragomir Milovanovic & Reinhard Lipowsky & Rumiana Dimova, 2025. "Lipid packing and cholesterol content regulate membrane wetting and remodeling by biomolecular condensates," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
- Emanuele Zippo & Dorothee Dormann & Thomas Speck & Lukas S. Stelzl, 2025. "Molecular simulations of enzymatic phosphorylation of disordered proteins and their condensates," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
- Claudio Bussi & Agustín Mangiarotti & Christian Vanhille-Campos & Beren Aylan & Enrica Pellegrino & Natalia Athanasiadi & Antony Fearns & Angela Rodgers & Titus M. Franzmann & Anđela Šarić & Rumiana D, 2023. "Publisher Correction: Stress granules plug and stabilize damaged endolysosomal membranes," Nature, Nature, vol. 624(7990), pages 3-3, December.
- Mina Farag & Wade M. Borcherds & Anne Bremer & Tanja Mittag & Rohit V. Pappu, 2023. "Phase separation of protein mixtures is driven by the interplay of homotypic and heterotypic interactions," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Andres R. Tejedor & Ignacio Sanchez-Burgos & Maria Estevez-Espinosa & Adiran Garaizar & Rosana Collepardo-Guevara & Jorge Ramirez & Jorge R. Espinosa, 2022. "Protein structural transitions critically transform the network connectivity and viscoelasticity of RNA-binding protein condensates but RNA can prevent it," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Bernardo Gouveia & Yoonji Kim & Joshua W. Shaevitz & Sabine Petry & Howard A. Stone & Clifford P. Brangwynne, 2022. "Capillary forces generated by biomolecular condensates," Nature, Nature, vol. 609(7926), pages 255-264, September.
- Keren Lasker & Steven Boeynaems & Vinson Lam & Daniel Scholl & Emma Stainton & Adam Briner & Maarten Jacquemyn & Dirk Daelemans & Ashok Deniz & Elizabeth Villa & Alex S. Holehouse & Aaron D. Gitler & , 2022. "The material properties of a bacterial-derived biomolecular condensate tune biological function in natural and synthetic systems," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- William E. Arter & Runzhang Qi & Nadia A. Erkamp & Georg Krainer & Kieran Didi & Timothy J. Welsh & Julia Acker & Jonathan Nixon-Abell & Seema Qamar & Jordina Guillén-Boixet & Titus M. Franzmann & Dav, 2022. "Biomolecular condensate phase diagrams with a combinatorial microdroplet platform," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
- Chenyang Lan & Juhyeong Kim & Svenja Ulferts & Fernando Aprile-Garcia & Sophie Weyrauch & Abhinaya Anandamurugan & Robert Grosse & Ritwick Sawarkar & Aleks Reinhardt & Thorsten Hugel, 2023. "Quantitative real-time in-cell imaging reveals heterogeneous clusters of proteins prior to condensation," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
- Stephen E. Farr & Esmae J. Woods & Jerelle A. Joseph & Adiran Garaizar & Rosana Collepardo-Guevara, 2021. "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
- Carmen N. Hernández-Candia & Sarah Pearce & Chandra L. Tucker, 2021. "A modular tool to query and inducibly disrupt biomolecular condensates," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
- Rachel S. Fisher & Shana Elbaum-Garfinkle, 2020. "Tunable multiphase dynamics of arginine and lysine liquid condensates," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
- Agustín Mangiarotti & Nannan Chen & Ziliang Zhao & Reinhard Lipowsky & Rumiana Dimova, 2023. "Wetting and complex remodeling of membranes by biomolecular condensates," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Aishwarya Agarwal & Lisha Arora & Sandeep K. Rai & Anamika Avni & Samrat Mukhopadhyay, 2022. "Spatiotemporal modulations in heterotypic condensates of prion and α-synuclein control phase transitions and amyloid conversion," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Anamika Avni & Ashish Joshi & Anuja Walimbe & Swastik G. Pattanashetty & Samrat Mukhopadhyay, 2022. "Single-droplet surface-enhanced Raman scattering decodes the molecular determinants of liquid-liquid phase separation," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Ashish Joshi & Anuja Walimbe & Anamika Avni & Sandeep K. Rai & Lisha Arora & Snehasis Sarkar & Samrat Mukhopadhyay, 2023. "Single-molecule FRET unmasks structural subpopulations and crucial molecular events during FUS low-complexity domain phase separation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Shunsuke F. Shimobayashi & Pierre Ronceray & David W. Sanders & Mikko P. Haataja & Clifford P. Brangwynne, 2021. "Nucleation landscape of biomolecular condensates," Nature, Nature, vol. 599(7885), pages 503-506, November.
- Reinier Damman & Stefan Schütz & Yanzhang Luo & Markus Weingarth & Remco Sprangers & Marc Baldus, 2019. "Atomic-level insight into mRNA processing bodies by combining solid and solution-state NMR spectroscopy," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Nicola Galvanetto & Miloš T. Ivanović & Aritra Chowdhury & Andrea Sottini & Mark F. Nüesch & Daniel Nettels & Robert B. Best & Benjamin Schuler, 2023. "Extreme dynamics in a biomolecular condensate," Nature, Nature, vol. 619(7971), pages 876-883, July.
- Ibraheem Alshareedah & Mahdi Muhammad Moosa & Matthew Pham & Davit A. Potoyan & Priya R. Banerjee, 2021. "Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Andrew Z. Lin & Kiersten M. Ruff & Furqan Dar & Ameya Jalihal & Matthew R. King & Jared M. Lalmansingh & Ammon E. Posey & Nadia A. Erkamp & Ian Seim & Amy S. Gladfelter & Rohit V. Pappu, 2023. "Dynamical control enables the formation of demixed biomolecular condensates," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Archishman Ghosh & Divya Kota & Huan-Xiang Zhou, 2021. "Shear relaxation governs fusion dynamics of biomolecular condensates," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Anne Ramat & Ali Haidar & Céline Garret & Martine Simonelig, 2024. "Spatial organization of translation and translational repression in two phases of germ granules," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Furqan Dar & Samuel R. Cohen & Diana M. Mitrea & Aaron H. Phillips & Gergely Nagy & Wellington C. Leite & Christopher B. Stanley & Jeong-Mo Choi & Richard W. Kriwacki & Rohit V. Pappu, 2024. "Biomolecular condensates form spatially inhomogeneous network fluids," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Joshua A. Riback & Lian Zhu & Mylene C. Ferrolino & Michele Tolbert & Diana M. Mitrea & David W. Sanders & Ming-Tzo Wei & Richard W. Kriwacki & Clifford P. Brangwynne, 2020. "Composition-dependent thermodynamics of intracellular phase separation," Nature, Nature, vol. 581(7807), pages 209-214, May.
- Agustín Mangiarotti & Macarena Siri & Nicky W. Tam & Ziliang Zhao & Leonel Malacrida & Rumiana Dimova, 2023. "Biomolecular condensates modulate membrane lipid packing and hydration," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
- Georg Krainer & Timothy J. Welsh & Jerelle A. Joseph & Jorge R. Espinosa & Sina Wittmann & Ella Csilléry & Akshay Sridhar & Zenon Toprakcioglu & Giedre Gudiškytė & Magdalena A. Czekalska & William E. , 2021. "Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Rikhia Ghosh & Vahid Satarifard & Reinhard Lipowsky, 2023. "Different pathways for engulfment and endocytosis of liquid droplets by nanovesicles," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Yanning Wang & Shulin Li & Marcel Mokbel & Alexander I. May & Zizhen Liang & Yonglun Zeng & Weiqi Wang & Honghong Zhang & Feifei Yu & Katharina Sporbeck & Liwen Jiang & Sebastian Aland & Jaime Agudo-C, 2024. "Biomolecular condensates mediate bending and scission of endosome membranes," Nature, Nature, vol. 634(8036), pages 1204-1210, October.
- Maria Hondele & Ruchika Sachdev & Stephanie Heinrich & Juan Wang & Pascal Vallotton & Beatriz M. A. Fontoura & Karsten Weis, 2019. "DEAD-box ATPases are global regulators of phase-separated organelles," Nature, Nature, vol. 573(7772), pages 144-148, September.
- repec:plo:pcbi00:1005941 is not listed on IDEAS
- Pilong Li & Sudeep Banjade & Hui-Chun Cheng & Soyeon Kim & Baoyu Chen & Liang Guo & Marc Llaguno & Javoris V. Hollingsworth & David S. King & Salman F. Banani & Paul S. Russo & Qiu-Xing Jiang & B. Tra, 2012. "Phase transitions in the assembly of multivalent signalling proteins," Nature, Nature, vol. 483(7389), pages 336-340, March.
- Saumyak Mukherjee & Lars V. Schäfer, 2023. "Thermodynamic forces from protein and water govern condensate formation of an intrinsically disordered protein domain," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Claudio Bussi & Agustín Mangiarotti & Christian Vanhille-Campos & Beren Aylan & Enrica Pellegrino & Natalia Athanasiadi & Antony Fearns & Angela Rodgers & Titus M. Franzmann & Anđela Šarić & Rumiana D, 2023. "Stress granules plug and stabilize damaged endolysosomal membranes," Nature, Nature, vol. 623(7989), pages 1062-1069, November.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Furqan Dar & Samuel R. Cohen & Diana M. Mitrea & Aaron H. Phillips & Gergely Nagy & Wellington C. Leite & Christopher B. Stanley & Jeong-Mo Choi & Richard W. Kriwacki & Rohit V. Pappu, 2024. "Biomolecular condensates form spatially inhomogeneous network fluids," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Dinesh Sundaravadivelu Devarajan & Jiahui Wang & Beata Szała-Mendyk & Shiv Rekhi & Arash Nikoubashman & Young C. Kim & Jeetain Mittal, 2024. "Sequence-dependent material properties of biomolecular condensates and their relation to dilute phase conformations," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Agustín Mangiarotti & Macarena Siri & Nicky W. Tam & Ziliang Zhao & Leonel Malacrida & Rumiana Dimova, 2023. "Biomolecular condensates modulate membrane lipid packing and hydration," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
- Nadia A. Erkamp & Mina Farag & Yuanxin Qiu & Daoyuan Qian & Tomas Sneideris & Tingting Wu & Timothy J. Welsh & Hannes Ausserwöger & Tommy J. Krug & Gaurav Chauhan & David A. Weitz & Matthew D. Lew & T, 2025. "Differential interactions determine anisotropies at interfaces of RNA-based biomolecular condensates," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
- Andrew Z. Lin & Kiersten M. Ruff & Furqan Dar & Ameya Jalihal & Matthew R. King & Jared M. Lalmansingh & Ammon E. Posey & Nadia A. Erkamp & Ian Seim & Amy S. Gladfelter & Rohit V. Pappu, 2023. "Dynamical control enables the formation of demixed biomolecular condensates," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Agustín Mangiarotti & Elias Sabri & Kita Valerie Schmidt & Christian Hoffmann & Dragomir Milovanovic & Reinhard Lipowsky & Rumiana Dimova, 2025. "Lipid packing and cholesterol content regulate membrane wetting and remodeling by biomolecular condensates," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
- Ashish Joshi & Anuja Walimbe & Snehasis Sarkar & Lisha Arora & Gaganpreet Kaur & Prince Jhandai & Dhruba Chatterjee & Indranil Banerjee & Samrat Mukhopadhyay, 2024. "Intermolecular energy migration via homoFRET captures the modulation in the material property of phase-separated biomolecular condensates," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Manisha Poudyal & Komal Patel & Laxmikant Gadhe & Ajay Singh Sawner & Pradeep Kadu & Debalina Datta & Semanti Mukherjee & Soumik Ray & Ambuja Navalkar & Siddhartha Maiti & Debdeep Chatterjee & Jyoti D, 2023. "Intermolecular interactions underlie protein/peptide phase separation irrespective of sequence and structure at crowded milieu," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
- Ashish Joshi & Anuja Walimbe & Anamika Avni & Sandeep K. Rai & Lisha Arora & Snehasis Sarkar & Samrat Mukhopadhyay, 2023. "Single-molecule FRET unmasks structural subpopulations and crucial molecular events during FUS low-complexity domain phase separation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Etienne Jambon-Puillet & Andrea Testa & Charlotta Lorenz & Robert W. Style & Aleksander A. Rebane & Eric R. Dufresne, 2024. "Phase-separated droplets swim to their dissolution," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Bruna Favetta & Huan Wang & Jasmine Cubuk & Arjun Singh & Mayur Barai & Cesar Ramirez & Haiyan Zheng & Adam J. Gormley & N. Sanjeeva Murthy & Gregory Dignon & Andrea Soranno & Zheng Shi & Benjamin S. , 2025. "Phosphorylation toggles the SARS-CoV-2 nucleocapsid protein between two membrane-associated condensate states," Nature Communications, Nature, vol. 16(1), pages 1-21, December.
- Agustín Mangiarotti & Nannan Chen & Ziliang Zhao & Reinhard Lipowsky & Rumiana Dimova, 2023. "Wetting and complex remodeling of membranes by biomolecular condensates," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Saumyak Mukherjee & Lars V. Schäfer, 2023. "Thermodynamic forces from protein and water govern condensate formation of an intrinsically disordered protein domain," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Mrityunjoy Kar & Laura T. Vogel & Gaurav Chauhan & Suren Felekyan & Hannes Ausserwöger & Timothy J. Welsh & Furqan Dar & Anjana R. Kamath & Tuomas P. J. Knowles & Anthony A. Hyman & Claus A. M. Seidel, 2024. "Solutes unmask differences in clustering versus phase separation of FET proteins," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Miriam Linsenmeier & Maria Hondele & Fulvio Grigolato & Eleonora Secchi & Karsten Weis & Paolo Arosio, 2022. "Dynamic arrest and aging of biomolecular condensates are modulated by low-complexity domains, RNA and biochemical activity," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Emanuele Zippo & Dorothee Dormann & Thomas Speck & Lukas S. Stelzl, 2025. "Molecular simulations of enzymatic phosphorylation of disordered proteins and their condensates," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
- Min Lee & Hyungseok C. Moon & Hyeonjeong Jeong & Dong Wook Kim & Hye Yoon Park & Yongdae Shin, 2024. "Optogenetic control of mRNA condensation reveals an intimate link between condensate material properties and functions," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Hannes Ausserwöger & Ella Csilléry & Daoyuan Qian & Georg Krainer & Timothy J. Welsh & Tomas Sneideris & Titus M. Franzmann & Seema Qamar & Nadia A. Erkamp & Jonathon Nixon-Abell & Mrityunjoy Kar & Pe, 2025. "Quantifying collective interactions in biomolecular phase separation," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
- Mina Farag & Wade M. Borcherds & Anne Bremer & Tanja Mittag & Rohit V. Pappu, 2023. "Phase separation of protein mixtures is driven by the interplay of homotypic and heterotypic interactions," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Ellen H. Brumbaugh-Reed & Yang Gao & Kazuhiro Aoki & Jared E. Toettcher, 2024. "Rapid and reversible dissolution of biomolecular condensates using light-controlled recruitment of a solubility tag," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-62055-8. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.