IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-61688-z.html
   My bibliography  Save this article

Boosting RNA nanotherapeutics with V-ATPase activating non-inflammatory lipid nanoparticles to treat chronic lung injury

Author

Listed:
  • Zhiqiang Zhao

    (Peking University
    Peking University
    Shenyang Pharmaceutical University)

  • Xinzhu Shan

    (Peking University
    Peking University)

  • Jing Ding

    (Peking University People’s Hospital)

  • Bin Ma

    (Peking University
    Peking University)

  • Buyao Li

    (Peking University
    Peking University)

  • Wendi Huang

    (Chinese Academy of Sciences)

  • Qingqing Yang

    (Peking University International Cancer Institute
    Peking University Cancer Hospital & Institute
    Peking University Cancer Hospital & Institute
    Peking University-Yunnan Baiyao International Medical Research Center)

  • Yian Fang

    (Peking University
    Peking University)

  • Junhe Chen

    (University of North Carolina at Chapel Hill)

  • Chenglin Song

    (Peking University)

  • Chenlong Wei

    (Peking University
    Peking University)

  • Shuai Liu

    (Chinese Academy of Sciences)

  • Xingdi Cheng

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Shengran Zhang

    (Peking University
    Peking University)

  • Yunxuan Liu

    (Peking University
    Peking University)

  • Hongkun Wu

    (the First Affiliated Hospital of Zhejiang University School of Medicine)

  • Cong Luo

    (Shenyang Pharmaceutical University)

  • Shaokun Shu

    (Peking University International Cancer Institute
    Peking University Cancer Hospital & Institute
    Peking University Cancer Hospital & Institute
    Peking University-Yunnan Baiyao International Medical Research Center)

  • Xue Qiao

    (Peking University)

  • Zefeng Wang

    (Chinese Academy of Sciences
    Southern University of Science and Technology)

  • Xueguang Lu

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Lei Miao

    (Peking University
    Peking University
    Peking University-Yunnan Baiyao International Medical Research Center)

Abstract

Lipid nanoparticles (LNPs) are a promising platform for mRNA delivery. However, their use in inflammatory pulmonary diseases is limited by reactogenicity and suboptimal delivery. Here we develop a non-inflammatory LNP (NIF-LNP) by incorporating ursolic acid, identified from a natural product library, into a biodegradable, cationic phosphoramide-derived LNP formulation. NIF-LNPs exhibit a 40-fold enhancement in lung protein expression without causing significant reactogenicity compared to LNPs containing ALC-0315. Our CRISPR-KO mechanistic studies uncover that ursolic acid promote endosome acidification by activating the V-ATPase complex, acting as a central hub for endosomal trafficking of LNPs and inflammation control. Furthermore, we identify an intracellular circadian regulatory gene, NR1D1, encapsulated in NIF-LNPs, showing notable therapeutic efficacy in bronchopulmonary dysplasia and lung fibrosis. To enhance clinical feasibility, we have developed a lyophilized formulation that maintains stability for over 90 days and ensures efficient nebulization in preclinical male mouse, pup rat, and male dog models. Overall, this V-ATPase-activating atomized NIF-LNP presents a viable strategy for treating variable chronic inflammatory lung diseases.

Suggested Citation

  • Zhiqiang Zhao & Xinzhu Shan & Jing Ding & Bin Ma & Buyao Li & Wendi Huang & Qingqing Yang & Yian Fang & Junhe Chen & Chenglin Song & Chenlong Wei & Shuai Liu & Xingdi Cheng & Shengran Zhang & Yunxuan , 2025. "Boosting RNA nanotherapeutics with V-ATPase activating non-inflammatory lipid nanoparticles to treat chronic lung injury," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-61688-z
    DOI: 10.1038/s41467-025-61688-z
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-61688-z
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-61688-z?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Thomas Kirkegaard & Anke G. Roth & Nikolaj H. T. Petersen & Ajay K. Mahalka & Ole Dines Olsen & Irina Moilanen & Alicja Zylicz & Jens Knudsen & Konrad Sandhoff & Christoph Arenz & Paavo K. J. Kinnunen, 2010. "Hsp70 stabilizes lysosomes and reverts Niemann–Pick disease-associated lysosomal pathology," Nature, Nature, vol. 463(7280), pages 549-553, January.
    2. Maria Hurskainen & Ivana Mižíková & David P. Cook & Noora Andersson & Chanèle Cyr-Depauw & Flore Lesage & Emmi Helle & Laurent Renesme & Robert P. Jankov & Markku Heikinheimo & Barbara C. Vanderhyden , 2021. "Single cell transcriptomic analysis of murine lung development on hyperoxia-induced damage," Nature Communications, Nature, vol. 12(1), pages 1-19, December.
    3. Xinzhu Shan & Zhiqiang Zhao & Pingping Lai & Yuxiu Liu & Buyao Li & Yubin Ke & Hanqiu Jiang & Yilong Zhou & Wenzhe Li & Qian Wang & Pengxia Qin & Yizhe Xue & Zihan Zhang & Chenlong Wei & Bin Ma & Wei , 2024. "RNA nanotherapeutics with fibrosis overexpression and retention for MASH treatment," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    4. Qixin Wang & Isaac Kirubakaran Sundar & Joseph H. Lucas & Jun-Gyu Park & Aitor Nogales & Luis Martinez-Sobrido & Irfan Rahman, 2023. "Circadian clock molecule REV-ERBα regulates lung fibrotic progression through collagen stabilization," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    5. Kexin Su & Lu Shi & Tao Sheng & Xinxin Yan & Lixin Lin & Chaoyang Meng & Shiqi Wu & Yuxuan Chen & Yao Zhang & Chaorong Wang & Zichuan Wang & Junjie Qiu & Jiahui Zhao & Tengfei Xu & Yuan Ping & Zhen Gu, 2024. "Reformulating lipid nanoparticles for organ-targeted mRNA accumulation and translation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    6. Teng Ma & Xiao Tian & Baoding Zhang & Mengqi Li & Yu Wang & Chunyan Yang & Jianfeng Wu & Xiaoyan Wei & Qi Qu & Yaxin Yu & Shating Long & Jin-Wei Feng & Chun Li & Cixiong Zhang & Changchuan Xie & Yayin, 2022. "Low-dose metformin targets the lysosomal AMPK pathway through PEN2," Nature, Nature, vol. 603(7899), pages 159-165, March.
    7. Kendall R. Sanson & Ruth E. Hanna & Mudra Hegde & Katherine F. Donovan & Christine Strand & Meagan E. Sullender & Emma W. Vaimberg & Amy Goodale & David E. Root & Federica Piccioni & John G. Doench, 2018. "Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Sean A. Misek & Aaron Fultineer & Jeremie Kalfon & Javad Noorbakhsh & Isabella Boyle & Priyanka Roy & Joshua Dempster & Lia Petronio & Katherine Huang & Alham Saadat & Thomas Green & Adam Brown & John, 2024. "Germline variation contributes to false negatives in CRISPR-based experiments with varying burden across ancestries," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    2. Chen Dong & Shuhua Fu & Rowan M. Karvas & Brian Chew & Laura A. Fischer & Xiaoyun Xing & Jessica K. Harrison & Pooja Popli & Ramakrishna Kommagani & Ting Wang & Bo Zhang & Thorold W. Theunissen, 2022. "A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    3. Yingfeng Tu & Qin Yang & Min Tang & Li Gao & Yuanhao Wang & Jiuqiang Wang & Zhe Liu & Xiaoyu Li & Lejiao Mao & Rui zhen Jia & Yuan Wang & Tie-shan Tang & Pinglong Xu & Yan Liu & Lunzhi Dai & Da Jia, 2024. "TBC1D23 mediates Golgi-specific LKB1 signaling," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
    4. Yudong Gao & Daichi Shonai & Matthew Trn & Jieqing Zhao & Erik J. Soderblom & S. Alexandra Garcia-Moreno & Charles A. Gersbach & William C. Wetsel & Geraldine Dawson & Dmitry Velmeshev & Yong-hui Jian, 2024. "Proximity analysis of native proteomes reveals phenotypic modifiers in a mouse model of autism and related neurodevelopmental conditions," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    5. Vicky Chou & Richard V. Pearse & Aimee J. Aylward & Nancy Ashour & Mariko Taga & Gizem Terzioglu & Masashi Fujita & Seeley B. Fancher & Alina Sigalov & Courtney R. Benoit & Hyo Lee & Matti Lam & Nicho, 2023. "INPP5D regulates inflammasome activation in human microglia," Nature Communications, Nature, vol. 14(1), pages 1-23, December.
    6. Teressa M. Shaw & Devra Huey & Makky Mousa-Makky & Jared Compaleo & Kylie Nennig & Aadit P. Shah & Fei Jiang & Xueer Qiu & Devon Klipsic & Raymond R. R. Rowland & Igor I. Slukvin & Meagan E. Sullender, 2024. "The neonatal Fc receptor (FcRn) is a pan-arterivirus receptor," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    7. Jeremy J. Ratiu & William E. Barclay & Elliot Lin & Qun Wang & Sebastian Wellford & Naren Mehta & Melissa J. Harnois & Devon DiPalma & Sumedha Roy & Alejandra V. Contreras & Mari L. Shinohara & David , 2022. "Loss of Zfp335 triggers cGAS/STING-dependent apoptosis of post-β selection thymocytes," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    8. Fei Li & Yizhe Wang & Inah Hwang & Ja-Young Jang & Libo Xu & Zhong Deng & Eun Young Yu & Yiming Cai & Caizhi Wu & Zhenbo Han & Yu-Han Huang & Xiangao Huang & Ling Zhang & Jun Yao & Neal F. Lue & Paul , 2023. "Histone demethylase KDM2A is a selective vulnerability of cancers relying on alternative telomere maintenance," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    9. Timothy P. Allen & Alison E. Roennfeldt & Moganalaxmi Reckdharajkumar & Adrienne E. Sullivan & Miaomiao Liu & Ronald J. Quinn & Darryl L. Russell & Daniel J. Peet & Murray L. Whitelaw & David C. Berst, 2025. "dFLASH; dual FLuorescent transcription factor activity sensor for histone integrated live-cell reporting and high-content screening," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
    10. Yandan Yang & Arnold Bolomsky & Thomas Oellerich & Ping Chen & Michele Ceribelli & Björn Häupl & George W. Wright & James D. Phelan & Da Wei Huang & James W. Lord & Callie K. Winkle & Xin Yu & Jan Wis, 2022. "Oncogenic RAS commandeers amino acid sensing machinery to aberrantly activate mTORC1 in multiple myeloma," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    11. Yong Yean Kim & Berkley E. Gryder & Ranuka Sinniah & Megan L. Peach & Jack F. Shern & Abdalla Abdelmaksoud & Silvia Pomella & Girma M. Woldemichael & Benjamin Z. Stanton & David Milewski & Joseph J. B, 2024. "KDM3B inhibitors disrupt the oncogenic activity of PAX3-FOXO1 in fusion-positive rhabdomyosarcoma," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    12. Yanli Liu & Zhong Wu & Jin Zhou & Dinesh K. A. Ramadurai & Katelyn L. Mortenson & Estrella Aguilera-Jimenez & Yifei Yan & Xiaojun Yang & Alison M. Taylor & Katherine E. Varley & Jason Gertz & Peter S., 2021. "A predominant enhancer co-amplified with the SOX2 oncogene is necessary and sufficient for its expression in squamous cancer," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    13. Chuannan Fan & Qian Wang & Peter H. L. Krijger & Davy Cats & Miriam Selle & Olga Khorosjutina & Soniya Dhanjal & Bernhard Schmierer & Hailiang Mei & Wouter de Laat & Peter ten Dijke, 2025. "Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
    14. Pengcheng Shang & Joshua D. Simpson & Gwen M. Taylor & Danica M. Sutherland & Olivia L. Welsh & Pavithra Aravamudhan & Rita Dos Santos Natividade & Kristina Schwab & Joshua J. Michel & Amanda C. Pohol, 2023. "Paired immunoglobulin-like receptor B is an entry receptor for mammalian orthoreovirus," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    15. Feng Li & Hongqiang Yu & Yujun Zhang & Yuanhang Ma & Xinlei Chen & Jie Zhang & Liangbo Sun & Rui Guo & Ying Wu & Ping Zheng & Xiaojun Wang & Ping Bie & Fengtian He & Leida Zhang & Chuanming Xie & Haoj, 2025. "F-box protein FBXO32 ubiquitinates and stabilizes D-type cyclins to drive cancer progression," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
    16. Amy J. Heidersbach & Kristel M. Dorighi & Javier A. Gomez & Ashley M. Jacobi & Benjamin Haley, 2023. "A versatile, high-efficiency platform for CRISPR-based gene activation," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    17. Roberta Esposito & Andrés Lanzós & Tina Uroda & Sunandini Ramnarayanan & Isabel Büchi & Taisia Polidori & Hugo Guillen-Ramirez & Ante Mihaljevic & Bernard Mefi Merlin & Lia Mela & Eugenio Zoni & Lusin, 2023. "Tumour mutations in long noncoding RNAs enhance cell fitness," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
    18. Zachariah L. McLean & Dadi Gao & Kevin Correia & Jennie C. L. Roy & Shota Shibata & Iris N. Farnum & Zoe Valdepenas-Mellor & Marina Kovalenko & Manasa Rapuru & Elisabetta Morini & Jayla Ruliera & Tamm, 2024. "Splice modulators target PMS1 to reduce somatic expansion of the Huntington’s disease-associated CAG repeat," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    19. Mahnaz Hosseinpour & Xinqi Xi & Ling Liu & Luis Malaver-Ortega & Laura Perlaza-Jimenez & Jihoon E. Joo & Harrison M. York & Jonathan Beesley & C. Elizabeth Caldon & Pierre-Antoine Dugué & James G. Dow, 2024. "SAM-DNMT3A, a strategy for induction of genome-wide DNA methylation, identifies DNA methylation as a vulnerability in ER-positive breast cancers," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    20. Wenjie Qiao & Christopher M. Richards & Youlim Kim & James R. Zengel & Siyuan Ding & Harry B. Greenberg & Jan E. Carette, 2024. "MYADM binds human parechovirus 1 and is essential for viral entry," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-61688-z. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.