IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-60471-4.html
   My bibliography  Save this article

Reversible proliferative arrest induced by rapid depletion of RNase MRP

Author

Listed:
  • Yuan Liu

    (Boyce Hall
    900 University Ave
    900 University Ave)

  • Shiyang He

    (Boyce Hall
    900 University Ave
    900 University Ave)

  • Kawon Pyo

    (Boyce Hall
    900 University Ave
    900 University Ave)

  • Reuben Franklin

    (Boyce Hall
    900 University Ave
    900 University Ave)

  • Ibrahim B. Maaz

    (Boyce Hall
    Beckman Center)

  • Chen Cai

    (Boyce Hall
    Eccles Institute of Human Genetics)

  • Kriti Shah

    (Boyce Hall
    Sherman Fairchild Science Building)

  • Sihem Cheloufi

    (Boyce Hall
    900 University Ave
    900 University Ave)

  • William F. Marzluff

    (University of North Carolina
    University of North Carolina)

  • Jernej Murn

    (Boyce Hall
    900 University Ave
    900 University Ave)

Abstract

Cellular quiescence is a state of reversible proliferative arrest that plays essential roles in development, resistance to stress, aging, and longevity of organisms. Here we report that rapid depletion of RNase MRP, a deeply conserved RNA-based enzyme required for rRNA biosynthesis, induces a long-term yet reversible proliferative arrest in human cells. Severely compromised biogenesis of rRNAs along with acute transcriptional reprogramming precede a gradual decline of the critical cellular functions. Unexpectedly, many arresting cells show increased levels of histone mRNAs, which accumulate locally in the cytoplasm, and S-phase DNA amount. The ensuing proliferative arrest is entered from multiple stages of the cell cycle and can last for several weeks with uncompromised cell viability. Strikingly, restoring expression of RNase MRP leads to a complete reversal of the arrested state with resumed cell proliferation at the speed of control cells. We suggest that targeting rRNA biogenesis may provide a general strategy for rapid induction of a reversible proliferative arrest, with implications for understanding and manipulating cellular quiescence.

Suggested Citation

  • Yuan Liu & Shiyang He & Kawon Pyo & Reuben Franklin & Ibrahim B. Maaz & Chen Cai & Kriti Shah & Sihem Cheloufi & William F. Marzluff & Jernej Murn, 2025. "Reversible proliferative arrest induced by rapid depletion of RNase MRP," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60471-4
    DOI: 10.1038/s41467-025-60471-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-60471-4
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-60471-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Kriti Shah & Shiyang He & David J. Turner & Joshua Corbo & Khadija Rebbani & Daniel Dominguez & Joseph M. Bateman & Sihem Cheloufi & Cátia Igreja & Eugene Valkov & Jernej Murn, 2024. "Regulation by the RNA-binding protein Unkempt at its effector interface," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    2. Behnam Nabet & Fleur M. Ferguson & Bo Kyung A. Seong & Miljan Kuljanin & Alan L. Leggett & Mikaela L. Mohardt & Amanda Robichaud & Amy S. Conway & Dennis L. Buckley & Joseph D. Mancias & James E. Brad, 2020. "Rapid and direct control of target protein levels with VHL-recruiting dTAG molecules," Nature Communications, Nature, vol. 11(1), pages 1-8, December.
    3. Robert A. J. Signer & Jeffrey A. Magee & Adrian Salic & Sean J. Morrison, 2014. "Haematopoietic stem cells require a highly regulated protein synthesis rate," Nature, Nature, vol. 509(7498), pages 49-54, May.
    4. Tom H. Cheung & Navaline L. Quach & Gregory W. Charville & Ling Liu & Lidia Park & Abdolhossein Edalati & Bryan Yoo & Phuong Hoang & Thomas A. Rando, 2012. "Maintenance of muscle stem-cell quiescence by microRNA-489," Nature, Nature, vol. 482(7386), pages 524-528, February.
    5. Reuben Franklin & Yiming Guo & Shiyang He & Meijuan Chen & Fei Ji & Xinyue Zhou & David Frankhouser & Brian T. Do & Carmen Chiem & Mihyun Jang & M. Andres Blanco & Matthew G. Vander Heiden & Russell C, 2022. "Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    6. Aydan Bulut-Karslioglu & Steffen Biechele & Hu Jin & Trisha A. Macrae & Miroslav Hejna & Marina Gertsenstein & Jun S. Song & Miguel Ramalho-Santos, 2016. "Inhibition of mTOR induces a paused pluripotent state," Nature, Nature, vol. 540(7631), pages 119-123, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Pekka Jaako & Alexandre Faille & Shengjiang Tan & Chi C. Wong & Norberto Escudero-Urquijo & Pablo Castro-Hartmann & Penny Wright & Christine Hilcenko & David J. Adams & Alan J. Warren, 2022. "eIF6 rebinding dynamically couples ribosome maturation and translation," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    2. Emily Sempou & Valentyna Kostiuk & Jie Zhu & M. Cecilia Guerra & Leonid Tyan & Woong Hwang & Elena Camacho-Aguilar & Michael J. Caplan & David Zenisek & Aryeh Warmflash & Nick D. L. Owens & Mustafa K., 2022. "Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    3. Shunlei Duan & Karl Agger & Jan-Erik Messling & Koutarou Nishimura & Xuerui Han & Isabel Peña-Rømer & Pavel Shliaha & Helene Damhofer & Max Douglas & Manas Kohli & Akos Pal & Yasmin Asad & Aaron Dyke , 2025. "WNK1 signalling regulates amino acid transport and mTORC1 activity to sustain acute myeloid leukaemia growth," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
    4. Haiyan Gu & Jing Yang & Jiayu Zhang & Ying Song & Yao Zhang & Pengfei Xu & Yuanxiang Zhu & Liangliang Wang & Pengfei Zhang & Lin Li & Dahua Chen & Qinmiao Sun, 2022. "PCBP2 maintains antiviral signaling homeostasis by regulating cGAS enzymatic activity via antagonizing its condensation," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    5. Narasaiah Kovuru & Makiko Mochizuki-Kashio & Theresa Menna & Greer Jeffrey & Yuning Hong & Young me Yoon & Zhe Zhang & Peter Kurre, 2024. "Deregulated protein homeostasis constrains fetal hematopoietic stem cell pool expansion in Fanconi anemia," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    6. Varadha Balaji Venkadakrishnan & Adam G. Presser & Richa Singh & Matthew A. Booker & Nicole A. Traphagen & Kenny Weng & Nathaniel C. E. Voss & Navin R. Mahadevan & Kei Mizuno & Loredana Puca & Osasena, 2024. "Lineage-specific canonical and non-canonical activity of EZH2 in advanced prostate cancer subtypes," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    7. Le Tran Phuc Khoa & Wentao Yang & Mengrou Shan & Li Zhang & Fengbiao Mao & Bo Zhou & Qiang Li & Rebecca Malcore & Clair Harris & Lili Zhao & Rajesh C. Rao & Shigeki Iwase & Sundeep Kalantry & Stephani, 2024. "Quiescence enables unrestricted cell fate in naive embryonic stem cells," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    8. Daniel P. Bondeson & Zachary Mullin-Bernstein & Sydney Oliver & Thomas A. Skipper & Thomas C. Atack & Nolan Bick & Meilani Ching & Andrew A. Guirguis & Jason Kwon & Carly Langan & Dylan Millson & Bren, 2022. "Systematic profiling of conditional degron tag technologies for target validation studies," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    9. Christoph Grohmann & Charlene M. Magtoto & Joel R. Walker & Ngee Kiat Chua & Anna Gabrielyan & Mary Hall & Simon A. Cobbold & Stephen Mieruszynski & Martin Brzozowski & Daniel S. Simpson & Hao Dong & , 2022. "Development of NanoLuc-targeting protein degraders and a universal reporter system to benchmark tag-targeted degradation platforms," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    10. Florisela Herrejon Chavez & Hanzhi Luo & Paolo Cifani & Alli Pine & Eren L. Chu & Suhasini Joshi & Ersilia Barin & Alexandra Schurer & Mandy Chan & Kathryn Chang & Grace Y. Q. Han & Aspen J. Pierson &, 2023. "RNA binding protein SYNCRIP maintains proteostasis and self-renewal of hematopoietic stem and progenitor cells," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    11. Swee Y. Sharp & Marianna Martella & Sabrina D’Agostino & Christopher I. Milton & George Ward & Andrew J. Woodhead & Caroline J. Richardson & Maria G. Carr & Elisabetta Chiarparin & Benjamin D. Cons & , 2024. "Integrating fragment-based screening with targeted protein degradation and genetic rescue to explore eIF4E function," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    12. Chrysanthi Kagiou & Jose A. Cisneros & Jakob Farnung & Joanna Liwocha & Fabian Offensperger & Kevin Dong & Ka Yang & Gary Tin & Christina S. Horstmann & Matthias Hinterndorfer & Joao A. Paulo & Natali, 2024. "Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    13. Jacqueline Feyen & Zhen Ping & Lanpeng Chen & Claire Dijk & Tim V. D. Tienhoven & Paulina M. H. Strien & Remco M. Hoogenboezem & Michiel J. W. Wevers & Mathijs A. Sanders & Ivo P. Touw & Marc H. G. P., 2022. "Myeloid cells promote interferon signaling-associated deterioration of the hematopoietic system," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    14. Wenshu Zeng & Lu Yue & Kim S. W. Lam & Wenxin Zhang & Wai-Kin So & Erin H. Y. Tse & Tom H. Cheung, 2022. "CPEB1 directs muscle stem cell activation by reprogramming the translational landscape," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    15. Congling Xu & Qian-Xing Zhou & Hai Zheng & Aixia Song & Wen-Ying Zhao & Ting-Ting Xu & Yan Xiong & Yi-Jie Zhang & Zixuan Huang & Yanhui Xu & Jingdong Cheng & Fei Xavier Chen, 2025. "DSS1 is required for proper Integrator–PP2A function," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
    16. Sarah E. Harris & Maria S. Alexis & Gilbert Giri & Francisco F. Cavazos & Yue Hu & Jernej Murn & Maria M. Aleman & Christopher B. Burge & Daniel Dominguez, 2024. "Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    17. Naomi R. Genuth & Zhen Shi & Koshi Kunimoto & Victoria Hung & Adele F. Xu & Craig H. Kerr & Gerald C. Tiu & Juan A. Oses-Prieto & Rachel E. A. Salomon-Shulman & Jeffrey D. Axelrod & Alma L. Burlingame, 2022. "A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    18. Lei Li & Yufei Lei & Yan Li & Yuxin Xie & Pusheng Hui & Xiaoyan Zang & Weiru Wu & Feng Wu & Jiankun Fan & Jianming Wang & Jieping Chen & Zhe Chen & Yu Hou, 2025. "EMP1 safeguards hematopoietic stem cells by suppressing sphingolipid metabolism and alleviating endoplasmic reticulum stress," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
    19. Arianna Moiani & Gil Letort & Sabrina Lizot & Anne Chalumeau & Chloe Foray & Tristan Felix & Diane Clerre & Sonal Temburni-Blake & Patrick Hong & Sophie Leduc & Noemie Pinard & Alan Marechal & Eduardo, 2024. "Non-viral DNA delivery and TALEN editing correct the sickle cell mutation in hematopoietic stem cells," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
    20. Mahshid Gazorpak & Karina M. Hugentobler & Dominique Paul & Pierre-Luc Germain & Miriam Kretschmer & Iryna Ivanova & Selina Frei & Kei Mathis & Remo Rudolf & Sergio Mompart Barrenechea & Vincent Fisch, 2023. "Harnessing PROTAC technology to combat stress hormone receptor activation," Nature Communications, Nature, vol. 14(1), pages 1-23, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60471-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.