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Complete biosynthetic pathway of furochromones in Saposhnikovia divaricata and its evolutionary mechanism in Apiaceae plants

Author

Listed:
  • Jian-lin Zou

    (Peking University)

  • Hong-ye Li

    (Peking University)

  • Bao Nie

    (Chinese Academy of Agricultural Sciences)

  • Zi-long Wang

    (Peking University)

  • Chun-xue Zhao

    (Peking University)

  • Yun-gang Tian

    (Peking University)

  • Li-qun Lin

    (Chinese Academy of Agricultural Sciences)

  • Wei-zhe Xu

    (A-1 Gaojing)

  • Zhuang-wei Hou

    (Chinese Academy of Agricultural Sciences)

  • Wen-kai Sun

    (Chinese Academy of Agricultural Sciences)

  • Xiao-xu Han

    (Chinese Academy of Agricultural Sciences)

  • Meng Zhang

    (Peking University)

  • Hao-tian Wang

    (Peking University)

  • Qing-yan Li

    (A-1 Gaojing)

  • Li Wang

    (Chinese Academy of Agricultural Sciences)

  • Min Ye

    (Peking University)

Abstract

Furochromones are specific bioactive secondary metabolites of many Apiaceae plants. Their biosynthesis remains largely unexplored. In this work, we dissect the complete biosynthetic pathway of major furochromones in the medicinal plant Saposhnikovia divaricata by characterizing prenyltransferase, peucenin cyclase, methyltransferase, hydroxylase, and glycosyltransferases. De novo biosynthesis of prim-O-glucosylcimifugin and 5-O-methylvisamminoside is realized in Nicotiana benthamiana leaves. Through comparative genomic and transcriptomic analyses, we further find that proximal duplication and high expression of a pentaketide chromone synthase gene SdPCS, together with the presence of a lineage-specific peucenin cyclase gene SdPC, lead to the predominant accumulation of furochromones in the roots of S. divaricata among surveyed Apiaceae plants. This study paves the way for metabolic engineering production of furochromones, and sheds light into evolutionary mechanisms of furochromone biosynthesis among Apiaceae plants.

Suggested Citation

  • Jian-lin Zou & Hong-ye Li & Bao Nie & Zi-long Wang & Chun-xue Zhao & Yun-gang Tian & Li-qun Lin & Wei-zhe Xu & Zhuang-wei Hou & Wen-kai Sun & Xiao-xu Han & Meng Zhang & Hao-tian Wang & Qing-yan Li & L, 2025. "Complete biosynthetic pathway of furochromones in Saposhnikovia divaricata and its evolutionary mechanism in Apiaceae plants," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-58498-8
    DOI: 10.1038/s41467-025-58498-8
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    1. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    2. Xiao-Hui Wang & Bo-Wen Gao & Yu Nakashima & Takahiro Mori & Zhong-Xiu Zhang & Takeshi Kodama & Yuan-E Lee & Ze-Kun Zhang & Chin-Piow Wong & Qian-Qian Liu & Bo-Wen Qi & Juan Wang & Jun Li & Xiao Liu & , 2022. "Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    3. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
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