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Structure-guided design of partial agonists at an opioid receptor

Author

Listed:
  • Balazs R. Varga

    (Washington University School of Medicine)

  • Sarah M. Bernhard

    (Washington University School of Medicine)

  • Amal El Daibani

    (Washington University School of Medicine)

  • Saheem A. Zaidi

    (University of Southern California)

  • Jordy H. Lam

    (University of Southern California)

  • Jhoan Aguilar

    (Washington University School of Medicine)

  • Kevin Appourchaux

    (Washington University School of Medicine)

  • Antonina L. Nazarova

    (University of Southern California)

  • Alexa Kouvelis

    (Washington University School of Medicine)

  • Ryosuke Shinouchi

    (University of Florida)

  • Haylee R. Hammond

    (University of Florida)

  • Shainnel O. Eans

    (University of Florida)

  • Violetta Weinreb

    (University of North Carolina Chapel Hill)

  • Elyssa B. Margolis

    (University of California)

  • Jonathan F. Fay

    (University of Maryland Baltimore)

  • Xi-Ping Huang

    (University of North Carolina Chapel Hill)

  • Amynah Pradhan

    (Washington University School of Medicine)

  • Vsevolod Katritch

    (University of Southern California)

  • Jay P. McLaughlin

    (University of Florida)

  • Susruta Majumdar

    (Washington University School of Medicine)

  • Tao Che

    (Washington University School of Medicine)

Abstract

Chronic pain and opioid overdose deaths highlight the need for non-addictive analgesics with novel mechanisms. The δ opioid receptor (δOR) is a promising target, as it lacks the respiratory depression associated with µ opioid receptor (µOR) agonists. However, early δOR full agonists caused seizures, limiting their clinical use. Partial δOR agonists may offer more controlled receptor activation than full agonists, but their development has been hindered by uncertainty regarding the molecular mechanism of partial agonism. Here we show that C6-Quino, a bitopic ligand developed through structure-based design, acts as a selective δOR partial agonist. Functional studies reveal that C6-Quino shows differential activity at G-protein and arrestin pathways and interacts with the sodium binding pocket, confirmed through cryo-EM analysis. C6-Quino demonstrates oral activity, analgesic activity in chronic pain models without causing δOR-related seizures and µOR-related adverse effects which have limited opioid usage in recent times. This discovery outlines a new strategy for developing δOR-targeted analgesics and provides a framework for optimizing signaling profiles of other Class A GPCRs.

Suggested Citation

  • Balazs R. Varga & Sarah M. Bernhard & Amal El Daibani & Saheem A. Zaidi & Jordy H. Lam & Jhoan Aguilar & Kevin Appourchaux & Antonina L. Nazarova & Alexa Kouvelis & Ryosuke Shinouchi & Haylee R. Hammo, 2025. "Structure-guided design of partial agonists at an opioid receptor," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-57734-5
    DOI: 10.1038/s41467-025-57734-5
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    References listed on IDEAS

    as
    1. Gustavo Fenalti & Patrick M. Giguere & Vsevolod Katritch & Xi-Ping Huang & Aaron A. Thompson & Vadim Cherezov & Bryan L. Roth & Raymond C. Stevens, 2014. "Molecular control of δ-opioid receptor signalling," Nature, Nature, vol. 506(7487), pages 191-196, February.
    2. Fredrik Sadler & Ning Ma & Michael Ritt & Yatharth Sharma & Nagarajan Vaidehi & Sivaraj Sivaramakrishnan, 2023. "Autoregulation of GPCR signalling through the third intracellular loop," Nature, Nature, vol. 615(7953), pages 734-741, March.
    3. Lin Cheng & Zhuang Miao & Sicen Liu & Zhe Li & Hong Fu & Chanjuan Xu & Shilong Hu & Chang Zhao & Yuxuan Liu & Tiantian Zhao & Wencheng Liu & Heli Wang & Runduo Liu & Wei Yan & Xiangdong Tang & Jianfen, 2024. "Cryo-EM structure of small-molecule agonist bound delta opioid receptor-Gi complex enables discovery of biased compound," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    4. Abdelfattah Faouzi & Haoqing Wang & Saheem A. Zaidi & Jeffrey F. DiBerto & Tao Che & Qianhui Qu & Michael J. Robertson & Manish K. Madasu & Amal El Daibani & Balazs R. Varga & Tiffany Zhang & Claudia , 2023. "Structure-based design of bitopic ligands for the µ-opioid receptor," Nature, Nature, vol. 613(7945), pages 767-774, January.
    5. Jianming Han & Jingying Zhang & Antonina L. Nazarova & Sarah M. Bernhard & Brian E. Krumm & Lei Zhao & Jordy Homing Lam & Vipin A. Rangari & Susruta Majumdar & David E. Nichols & Vsevolod Katritch & P, 2023. "Ligand and G-protein selectivity in the κ-opioid receptor," Nature, Nature, vol. 617(7960), pages 417-425, May.
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