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Complete pathway elucidation of echinacoside in Cistanche tubulosa and de novo biosynthesis of phenylethanoid glycosides

Author

Listed:
  • Wenqian Huang

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Yaru Yan

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Weisheng Tian

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Xiaoxue Cui

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Yingxia Wang

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Yuelin Song

    (Beijing University of Chinese Medicine)

  • Ting Mo

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Xiping Xu

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Saijing Zhao

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Yuyu Liu

    (Beijing University of Chinese Medicine
    Beijing University of Chinese Medicine)

  • Xiaohui Wang

    (Beijing University of Chinese Medicine)

  • Juan Wang

    (Beijing University of Chinese Medicine)

  • Yong Jiang

    (Peking University)

  • Jun Li

    (Beijing University of Chinese Medicine)

  • She-po Shi

    (Beijing University of Chinese Medicine)

  • Xiao Liu

    (Beijing University of Chinese Medicine)

  • Pengfei Tu

    (Beijing University of Chinese Medicine
    Peking University)

Abstract

Echinacoside (ECH), one of the most representative phenylethanoid glycosides (PhGs), has considerable neuroprotective effects and is an effective ingredient in numerous commercial drugs. Here, we elucidate the complete ECH biosynthetic pathway in the medicinal plant Cistanche tubulosa. In total, 14 related genes are cloned and functionally characterized. Two upstream pathways for tyrosol biosynthesis from L-tyrosine are identified: one includes separate decarboxylation, deamination and reduction steps; the other uses microbial-like transamination, decarboxylation and reduction steps. In addition, a distinct downstream assembly process from tyrosol to ECH is revealed that includes sequential glucosylation, acylation, hydroxylation, and rhamnosylation to form acteoside, and ends with a final glucosylation converting acteoside to ECH. Furthermore, the de novo synthesis of 23 PhG derivatives is achieved via the heterologous expression of different combinations of the functional genes in tobacco. Our findings provide insights into the biosynthesis of ECH and a platform for alternative production of complex PhGs.

Suggested Citation

  • Wenqian Huang & Yaru Yan & Weisheng Tian & Xiaoxue Cui & Yingxia Wang & Yuelin Song & Ting Mo & Xiping Xu & Saijing Zhao & Yuyu Liu & Xiaohui Wang & Juan Wang & Yong Jiang & Jun Li & She-po Shi & Xiao, 2025. "Complete pathway elucidation of echinacoside in Cistanche tubulosa and de novo biosynthesis of phenylethanoid glycosides," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-56243-9
    DOI: 10.1038/s41467-025-56243-9
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    1. Benke Hong & Dagny Grzech & Lorenzo Caputi & Prashant Sonawane & Carlos E. Rodríguez López & Mohamed Omar Kamileen & Néstor J. Hernández Lozada & Veit Grabe & Sarah E. O’Connor, 2022. "Biosynthesis of strychnine," Nature, Nature, vol. 607(7919), pages 617-622, July.
    2. Benke Hong & Dagny Grzech & Lorenzo Caputi & Prashant Sonawane & Carlos E. Rodríguez López & Mohamed Omar Kamileen & Néstor J. Hernández Lozada & Veit Grabe & Sarah E. O’Connor, 2022. "Publisher Correction: Biosynthesis of strychnine," Nature, Nature, vol. 608(7924), pages 37-37, August.
    3. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    4. Heejin Yoo & Joshua R. Widhalm & Yichun Qian & Hiroshi Maeda & Bruce R. Cooper & Amber S. Jannasch & Itay Gonda & Efraim Lewinsohn & David Rhodes & Natalia Dudareva, 2013. "An alternative pathway contributes to phenylalanine biosynthesis in plants via a cytosolic tyrosine:phenylpyruvate aminotransferase," Nature Communications, Nature, vol. 4(1), pages 1-11, December.
    5. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
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