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The transcriptional regulatory network modulating human trophoblast stem cells to extravillous trophoblast differentiation

Author

Listed:
  • Mijeong Kim

    (The University of Texas at Austin)

  • Yu Jin Jang

    (The University of Texas at Austin)

  • Muyoung Lee

    (The University of Texas at Austin)

  • Qingqing Guo

    (The University of Texas at Austin)

  • Albert J. Son

    (The University of Texas at Austin)

  • Nikita A. Kakkad

    (The University of Texas at Austin)

  • Abigail B. Roland

    (The University of Texas at Austin)

  • Bum-Kyu Lee

    (State University of New York)

  • Jonghwan Kim

    (The University of Texas at Austin)

Abstract

During human pregnancy, extravillous trophoblasts play crucial roles in placental invasion into the maternal decidua and spiral artery remodeling. However, regulatory factors and their action mechanisms modulating human extravillous trophoblast specification have been unknown. By analyzing dynamic changes in transcriptome and enhancer profile during human trophoblast stem cell to extravillous trophoblast differentiation, we define stage-specific regulators, including an early-stage transcription factor, TFAP2C, and multiple late-stage transcription factors. Loss-of-function studies confirm the requirement of all transcription factors identified for adequate differentiation, and we reveal that the dynamic changes in the levels of TFAP2C are essential. Notably, TFAP2C pre-occupies the regulatory elements of the inactive extravillous trophoblast-active genes during the early stage of differentiation, and the late-stage transcription factors directly activate extravillous trophoblast-active genes, including themselves as differentiation further progresses, suggesting sequential actions of transcription factors assuring differentiation. Our results reveal stage-specific transcription factors and their inter-connected regulatory mechanisms modulating extravillous trophoblast differentiation, providing a framework for understanding early human placentation and placenta-related complications.

Suggested Citation

  • Mijeong Kim & Yu Jin Jang & Muyoung Lee & Qingqing Guo & Albert J. Son & Nikita A. Kakkad & Abigail B. Roland & Bum-Kyu Lee & Jonghwan Kim, 2024. "The transcriptional regulatory network modulating human trophoblast stem cells to extravillous trophoblast differentiation," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45669-2
    DOI: 10.1038/s41467-024-45669-2
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    as
    1. Mingsen Li & Huaxing Huang & Lingyu Li & Chenxi He & Liqiong Zhu & Huizhen Guo & Li Wang & Jiafeng Liu & Siqi Wu & Jingxin Liu & Tao Xu & Zhen Mao & Nan Cao & Kang Zhang & Fei Lan & Junjun Ding & Jin , 2021. "Core transcription regulatory circuitry orchestrates corneal epithelial homeostasis," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    2. Mark B. Gerstein & Anshul Kundaje & Manoj Hariharan & Stephen G. Landt & Koon-Kiu Yan & Chao Cheng & Xinmeng Jasmine Mu & Ekta Khurana & Joel Rozowsky & Roger Alexander & Renqiang Min & Pedro Alves & , 2012. "Architecture of the human regulatory network derived from ENCODE data," Nature, Nature, vol. 489(7414), pages 91-100, September.
    3. Chen Dong & Shuhua Fu & Rowan M. Karvas & Brian Chew & Laura A. Fischer & Xiaoyun Xing & Jessica K. Harrison & Pooja Popli & Ramakrishna Kommagani & Ting Wang & Bo Zhang & Thorold W. Theunissen, 2022. "A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    4. Anna Arutyunyan & Kenny Roberts & Kevin Troulé & Frederick C. K. Wong & Megan A. Sheridan & Ilia Kats & Luz Garcia-Alonso & Britta Velten & Regina Hoo & Elias R. Ruiz-Morales & Carmen Sancho-Serra & J, 2023. "Spatial multiomics map of trophoblast development in early pregnancy," Nature, Nature, vol. 616(7955), pages 143-151, April.
    5. Yingyao Zhou & Bin Zhou & Lars Pache & Max Chang & Alireza Hadj Khodabakhshi & Olga Tanaseichuk & Christopher Benner & Sumit K. Chanda, 2019. "Metascape provides a biologist-oriented resource for the analysis of systems-level datasets," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
    6. Ian C McDowell & Dinesh Manandhar & Christopher M Vockley & Amy K Schmid & Timothy E Reddy & Barbara E Engelhardt, 2018. "Clustering gene expression time series data using an infinite Gaussian process mixture model," PLOS Computational Biology, Public Library of Science, vol. 14(1), pages 1-27, January.
    7. Satoshi Kakugawa & Paul F. Langton & Matthias Zebisch & Steven A. Howell & Tao-Hsin Chang & Yan Liu & Ten Feizi & Ganka Bineva & Nicola O’Reilly & Ambrosius P. Snijders & E. Yvonne Jones & Jean-Paul V, 2015. "Notum deacylates Wnt proteins to suppress signalling activity," Nature, Nature, vol. 519(7542), pages 187-192, March.
    8. Fumio Nakaki & Katsuhiko Hayashi & Hiroshi Ohta & Kazuki Kurimoto & Yukihiro Yabuta & Mitinori Saitou, 2013. "Induction of mouse germ-cell fate by transcription factors in vitro," Nature, Nature, vol. 501(7466), pages 222-226, September.
    9. Roser Vento-Tormo & Mirjana Efremova & Rachel A. Botting & Margherita Y. Turco & Miquel Vento-Tormo & Kerstin B. Meyer & Jong-Eun Park & Emily Stephenson & Krzysztof Polański & Angela Goncalves & Lucy, 2018. "Single-cell reconstruction of the early maternal–fetal interface in humans," Nature, Nature, vol. 563(7731), pages 347-353, November.
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