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Extending the dynamic range of biomarker quantification through molecular equalization

Author

Listed:
  • Sharon S. Newman

    (Stanford University
    Stanford University)

  • Brandon D. Wilson

    (Stanford University
    Stanford University)

  • Daniel Mamerow

    (Stanford University
    Stanford University)

  • Benjamin C. Wollant

    (Stanford University)

  • Hnin Nyein

    (Stanford University)

  • Yael Rosenberg-Hasson

    (Stanford University)

  • Holden T. Maecker

    (Stanford University)

  • Michael Eisenstein

    (Stanford University
    Stanford University)

  • H. Tom Soh

    (Stanford University
    Stanford University
    Chan Zuckerberg Biohub)

Abstract

Precision medicine requires highly scalable methods of multiplexed biomarker quantification that can accurately describe patient physiology. Unfortunately, contemporary molecular detection methods are generally limited to a dynamic range of sensitivity spanning just 3–4 orders of magnitude, whereas the actual physiological dynamic range of the human plasma proteome spans more than 10 orders of magnitude. Current methods rely on sample splitting and differential dilution to compensate for this mismatch, but such measures greatly limit the reproducibility and scalability that can be achieved—in particular, the effects of non-linear dilution can greatly confound the analysis of multiplexed assays. We describe here a two-pronged strategy for equalizing the signal generated by each analyte in a multiplexed panel, thereby enabling simultaneous quantification of targets spanning a wide range of concentrations. We apply our ‘EVROS’ strategy to a proximity ligation assay and demonstrate simultaneous quantification of four analytes present at concentrations spanning from low femtomolar to mid-nanomolar levels. In this initial demonstration, we achieve a dynamic range spanning seven orders of magnitude in a single 5 µl sample of undiluted human serum, highlighting the opportunity to achieve sensitive, accurate detection of diverse analytes in a highly multiplexed fashion.

Suggested Citation

  • Sharon S. Newman & Brandon D. Wilson & Daniel Mamerow & Benjamin C. Wollant & Hnin Nyein & Yael Rosenberg-Hasson & Holden T. Maecker & Michael Eisenstein & H. Tom Soh, 2023. "Extending the dynamic range of biomarker quantification through molecular equalization," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39772-z
    DOI: 10.1038/s41467-023-39772-z
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