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Heterozygous frameshift variants in HNRNPA2B1 cause early-onset oculopharyngeal muscular dystrophy

Author

Listed:
  • Hong Joo Kim

    (St. Jude Children’s Research Hospital)

  • Payam Mohassel

    (National Institutes of Health)

  • Sandra Donkervoort

    (National Institutes of Health)

  • Lin Guo

    (Perelman School of Medicine at the University of Pennsylvania
    Thomas Jefferson University)

  • Kevin O’Donovan

    (St. Jude Children’s Research Hospital)

  • Maura Coughlin

    (St. Jude Children’s Research Hospital)

  • Xaviere Lornage

    (Université de Strasbourg)

  • Nicola Foulds

    (University of Southampton)

  • Simon R. Hammans

    (University Hospital Southampton)

  • A. Reghan Foley

    (National Institutes of Health)

  • Charlotte M. Fare

    (Perelman School of Medicine at the University of Pennsylvania)

  • Alice F. Ford

    (Perelman School of Medicine at the University of Pennsylvania)

  • Masashi Ogasawara

    (National Center of Neurology and Psychiatry (NCNP)
    NCNP, Kodaira)

  • Aki Sato

    (Niigata City General Hospital)

  • Aritoshi Iida

    (NCNP, Kodaira)

  • Pinki Munot

    (Great Ormond Street Institute of Child Health, University College London, & Great Ormond Street Hospital Trust)

  • Gautam Ambegaonkar

    (Addenbrookes Hospital)

  • Rahul Phadke

    (Dubowitz Neuromuscular Centre)

  • Dominic G. O’Donovan

    (Level 5 John Bonnett Clinical Laboratories Addenbrooke’s Hospital)

  • Rebecca Buchert

    (University of Tuebingen)

  • Mona Grimmel

    (University of Tuebingen)

  • Ana Töpf

    (Newcastle University and Newcastle Hospitals NHS Foundation Trust)

  • Irina T. Zaharieva

    (Great Ormond Street Institute of Child Health, University College London, & Great Ormond Street Hospital Trust)

  • Lauren Brady

    (Hamilton Health Sciences Centre)

  • Ying Hu

    (National Institutes of Health)

  • Thomas E. Lloyd

    (Johns Hopkins University School of Medicine)

  • Andrea Klein

    (University of Bern
    University of Basel)

  • Maja Steinlin

    (University of Bern)

  • Alice Kuster

    (University Hospital of Nantes)

  • Sandra Mercier

    (Centre de Référence des Maladies Neuromusculaires AOC
    l’institut du thorax)

  • Pascale Marcorelles

    (Université de Bretagne Occidentale)

  • Yann Péréon

    (Hôtel-Dieu)

  • Emmanuelle Fleurence

    (Etablissement de Santé pour Enfants et Adolescents de la région Nantaise)

  • Adnan Manzur

    (Great Ormond Street Institute of Child Health, University College London, & Great Ormond Street Hospital Trust)

  • Sarah Ennis

    (University of Southampton)

  • Rosanna Upstill-Goddard

    (University of Southampton)

  • Luca Bello

    (University of Padova)

  • Cinzia Bertolin

    (IRP Città della Speranza)

  • Elena Pegoraro

    (University of Padova)

  • Leonardo Salviati

    (IRP Città della Speranza)

  • Courtney E. French

    (University of Cambridge)

  • Andriy Shatillo

    (Psychiatry and Narcology of NAMS of Ukraine)

  • F. Lucy Raymond

    (University of Cambridge)

  • Tobias B. Haack

    (University of Tuebingen)

  • Susana Quijano-Roy

    (AP-HP Université Paris-Saclay)

  • Johann Böhm

    (Université de Strasbourg)

  • Isabelle Nelson

    (Centre of Research in Myology)

  • Tanya Stojkovic

    (Hôpital Pitié-Salpêtrière)

  • Teresinha Evangelista

    (Hôpital Pitié-Salpêtrière)

  • Volker Straub

    (Newcastle University and Newcastle Hospitals NHS Foundation Trust)

  • Norma B. Romero

    (Hôpital Pitié-Salpêtrière
    Hôpital Pitié-Salpêtrière)

  • Jocelyn Laporte

    (Université de Strasbourg)

  • Francesco Muntoni

    (Great Ormond Street Institute of Child Health, University College London, & Great Ormond Street Hospital Trust)

  • Ichizo Nishino

    (National Center of Neurology and Psychiatry (NCNP)
    NCNP, Kodaira)

  • Mark A. Tarnopolsky

    (Hamilton Health Sciences Centre)

  • James Shorter

    (Perelman School of Medicine at the University of Pennsylvania)

  • Carsten G. Bönnemann

    (National Institutes of Health)

  • J. Paul Taylor

    (St. Jude Children’s Research Hospital
    Howard Hughes Medical Institute)

Abstract

Missense variants in RNA-binding proteins (RBPs) underlie a spectrum of disease phenotypes, including amyotrophic lateral sclerosis, frontotemporal dementia, and inclusion body myopathy. Here, we present ten independent families with a severe, progressive muscular dystrophy, reminiscent of oculopharyngeal muscular dystrophy (OPMD) but of much earlier onset, caused by heterozygous frameshift variants in the RBP hnRNPA2/B1. All disease-causing frameshift mutations abolish the native stop codon and extend the reading frame, creating novel transcripts that escape nonsense-mediated decay and are translated to produce hnRNPA2/B1 protein with the same neomorphic C-terminal sequence. In contrast to previously reported disease-causing missense variants in HNRNPA2B1, these frameshift variants do not increase the propensity of hnRNPA2 protein to fibrillize. Rather, the frameshift variants have reduced affinity for the nuclear import receptor karyopherin β2, resulting in cytoplasmic accumulation of hnRNPA2 protein in cells and in animal models that recapitulate the human pathology. Thus, we expand the phenotypes associated with HNRNPA2B1 to include an early-onset form of OPMD caused by frameshift variants that alter its nucleocytoplasmic transport dynamics.

Suggested Citation

  • Hong Joo Kim & Payam Mohassel & Sandra Donkervoort & Lin Guo & Kevin O’Donovan & Maura Coughlin & Xaviere Lornage & Nicola Foulds & Simon R. Hammans & A. Reghan Foley & Charlotte M. Fare & Alice F. Fo, 2022. "Heterozygous frameshift variants in HNRNPA2B1 cause early-onset oculopharyngeal muscular dystrophy," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30015-1
    DOI: 10.1038/s41467-022-30015-1
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    References listed on IDEAS

    as
    1. Thomas O. Vogler & Joshua R. Wheeler & Eric D. Nguyen & Michael P. Hughes & Kyla A. Britson & Evan Lester & Bhalchandra Rao & Nicole Dalla Betta & Oscar N. Whitney & Theodore E. Ewachiw & Edward Gomes, 2018. "TDP-43 and RNA form amyloid-like myo-granules in regenerating muscle," Nature, Nature, vol. 563(7732), pages 508-513, November.
    2. Hong Joo Kim & Nam Chul Kim & Yong-Dong Wang & Emily A. Scarborough & Jennifer Moore & Zamia Diaz & Kyle S. MacLea & Brian Freibaum & Songqing Li & Amandine Molliex & Anderson P. Kanagaraj & Robert Ca, 2013. "Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS," Nature, Nature, vol. 495(7442), pages 467-473, March.
    3. Konrad J. Karczewski & Laurent C. Francioli & Grace Tiao & Beryl B. Cummings & Jessica Alföldi & Qingbo Wang & Ryan L. Collins & Kristen M. Laricchia & Andrea Ganna & Daniel P. Birnbaum & Laura D. Gau, 2020. "The mutational constraint spectrum quantified from variation in 141,456 humans," Nature, Nature, vol. 581(7809), pages 434-443, May.
    4. Brian D. Freibaum & Yubing Lu & Rodrigo Lopez-Gonzalez & Nam Chul Kim & Sandra Almeida & Kyung-Ha Lee & Nisha Badders & Marc Valentine & Bruce L. Miller & Philip C. Wong & Leonard Petrucelli & Hong Jo, 2015. "GGGGCC repeat expansion in C9orf72 compromises nucleocytoplasmic transport," Nature, Nature, vol. 525(7567), pages 129-133, September.
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