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Structure of Vibrio collagenase VhaC provides insight into the mechanism of bacterial collagenolysis

Author

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  • Yan Wang

    (Shandong University
    Ocean University of China
    Pilot National Laboratory for Marine Science and Technology)

  • Peng Wang

    (Ocean University of China
    Pilot National Laboratory for Marine Science and Technology)

  • Hai-Yan Cao

    (Shandong University
    Pilot National Laboratory for Marine Science and Technology)

  • Hai-Tao Ding

    (Polar Research Institute of China)

  • Hai-Nan Su

    (Shandong University
    Pilot National Laboratory for Marine Science and Technology)

  • Shi-Cheng Liu

    (Qingdao Vland Biotech Inc.)

  • Guangfeng Liu

    (Chinese Academy of Sciences)

  • Xia Zhang

    (Qingdao Vland Biotech Inc.)

  • Chun-Yang Li

    (Ocean University of China
    Pilot National Laboratory for Marine Science and Technology)

  • Ming Peng

    (Shandong University
    Pilot National Laboratory for Marine Science and Technology)

  • Fuchuan Li

    (Shandong University)

  • Shengying Li

    (Shandong University
    Pilot National Laboratory for Marine Science and Technology)

  • Yin Chen

    (Ocean University of China
    University of Warwick)

  • Xiu-Lan Chen

    (Shandong University
    Pilot National Laboratory for Marine Science and Technology)

  • Yu-Zhong Zhang

    (Ocean University of China
    Pilot National Laboratory for Marine Science and Technology
    Shandong University)

Abstract

The collagenases of Vibrio species, many of which are pathogens, have been regarded as an important virulence factor. However, there is little information on the structure and collagenolytic mechanism of Vibrio collagenase. Here, we report the crystal structure of the collagenase module (CM) of Vibrio collagenase VhaC and the conformation of VhaC in solution. Structural and biochemical analyses and molecular dynamics studies reveal that triple-helical collagen is initially recognized by the activator domain, followed by subsequent cleavage by the peptidase domain along with the closing movement of CM. This is different from the peptidolytic mode or the proposed collagenolysis of Clostridium collagenase. We propose a model for the integrated collagenolytic mechanism of VhaC, integrating the functions of VhaC accessory domains and its collagen degradation pattern. This study provides insight into the mechanism of bacterial collagenolysis and helps in structure-based drug design targeting of the Vibrio collagenase.

Suggested Citation

  • Yan Wang & Peng Wang & Hai-Yan Cao & Hai-Tao Ding & Hai-Nan Su & Shi-Cheng Liu & Guangfeng Liu & Xia Zhang & Chun-Yang Li & Ming Peng & Fuchuan Li & Shengying Li & Yin Chen & Xiu-Lan Chen & Yu-Zhong Z, 2022. "Structure of Vibrio collagenase VhaC provides insight into the mechanism of bacterial collagenolysis," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28264-1
    DOI: 10.1038/s41467-022-28264-1
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