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Principled approach to the selection of the embedding dimension of networks

Author

Listed:
  • Weiwei Gu

    (Beijing University of Chemical Technology)

  • Aditya Tandon

    (Indiana University)

  • Yong-Yeol Ahn

    (Indiana University
    Indiana University
    Massachusetts Institute of Technology)

  • Filippo Radicchi

    (Indiana University)

Abstract

Network embedding is a general-purpose machine learning technique that encodes network structure in vector spaces with tunable dimension. Choosing an appropriate embedding dimension – small enough to be efficient and large enough to be effective – is challenging but necessary to generate embeddings applicable to a multitude of tasks. Existing strategies for the selection of the embedding dimension rely on performance maximization in downstream tasks. Here, we propose a principled method such that all structural information of a network is parsimoniously encoded. The method is validated on various embedding algorithms and a large corpus of real-world networks. The embedding dimension selected by our method in real-world networks suggest that efficient encoding in low-dimensional spaces is usually possible.

Suggested Citation

  • Weiwei Gu & Aditya Tandon & Yong-Yeol Ahn & Filippo Radicchi, 2021. "Principled approach to the selection of the embedding dimension of networks," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-23795-5
    DOI: 10.1038/s41467-021-23795-5
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    Cited by:

    1. Robert Jankowski & Antoine Allard & Marián Boguñá & M. Ángeles Serrano, 2023. "The D-Mercator method for the multidimensional hyperbolic embedding of real networks," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    2. Pisanu Buphamalai & Tomislav Kokotovic & Vanja Nagy & Jörg Menche, 2021. "Network analysis reveals rare disease signatures across multiple levels of biological organization," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    3. Pedro Almagro & Marián Boguñá & M. Ángeles Serrano, 2022. "Detecting the ultra low dimensionality of real networks," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    4. Wagner, Andreas & Ramentol, Enislay & Schirra, Florian & Michaeli, Hendrik, 2022. "Short- and long-term forecasting of electricity prices using embedding of calendar information in neural networks," Journal of Commodity Markets, Elsevier, vol. 28(C).

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