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Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage

Author

Listed:
  • Howon Lee

    (Harvard Medical School
    Wyss Institute for Biologically Inspired Engineering)

  • Daniel J. Wiegand

    (Harvard Medical School
    Wyss Institute for Biologically Inspired Engineering)

  • Kettner Griswold

    (Harvard Medical School
    Wyss Institute for Biologically Inspired Engineering
    Massachusetts Institute of Technology
    Charles Stark Draper Laboratory)

  • Sukanya Punthambaker

    (Harvard Medical School
    Wyss Institute for Biologically Inspired Engineering)

  • Honggu Chun

    (Korea University)

  • Richie E. Kohman

    (Harvard Medical School
    Wyss Institute for Biologically Inspired Engineering)

  • George M. Church

    (Harvard Medical School
    Wyss Institute for Biologically Inspired Engineering)

Abstract

New storage technologies are needed to keep up with the global demands of data generation. DNA is an ideal storage medium due to its stability, information density and ease-of-readout with advanced sequencing techniques. However, progress in writing DNA is stifled by the continued reliance on chemical synthesis methods. The enzymatic synthesis of DNA is a promising alternative, but thus far has not been well demonstrated in a parallelized manner. Here, we report a multiplexed enzymatic DNA synthesis method using maskless photolithography. Rapid uncaging of Co2+ ions by patterned UV light activates Terminal deoxynucleotidyl Transferase (TdT) for spatially-selective synthesis on an array surface. Spontaneous quenching of reactions by the diffusion of excess caging molecules confines synthesis to light patterns and controls the extension length. We show that our multiplexed synthesis method can be used to store digital data by encoding 12 unique DNA oligonucleotide sequences with video game music, which is equivalent to 84 trits or 110 bits of data.

Suggested Citation

  • Howon Lee & Daniel J. Wiegand & Kettner Griswold & Sukanya Punthambaker & Honggu Chun & Richie E. Kohman & George M. Church, 2020. "Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage," Nature Communications, Nature, vol. 11(1), pages 1-9, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-020-18681-5
    DOI: 10.1038/s41467-020-18681-5
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    Cited by:

    1. Lifu Song & Feng Geng & Zi-Yi Gong & Xin Chen & Jijun Tang & Chunye Gong & Libang Zhou & Rui Xia & Ming-Zhe Han & Jing-Yi Xu & Bing-Zhi Li & Ying-Jin Yuan, 2022. "Robust data storage in DNA by de Bruijn graph-based de novo strand assembly," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    2. Afsaneh Sadremomtaz & Robert F. Glass & Jorge Eduardo Guerrero & Dennis R. LaJeunesse & Eric A. Josephs & Reza Zadegan, 2023. "Digital data storage on DNA tape using CRISPR base editors," Nature Communications, Nature, vol. 14(1), pages 1-10, December.

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