The Overlooked Decomposers: Effects of Composting Materials and Duration on the Mesofauna Mediating Humification

Compost fauna act by releasing various enzymes that break down organic matter into a stable, agriculturally useful products. Mesofauna are the least studied compared to micro- and macrofauna, with the existing studies relying on classical methods such as morphological identification, essentially leaving out cryptic taxa. We sought to evaluate the ecological response of the mesofauna community to different composting materials and durations. Total mesofauna community 18S rRNA was purified in triplicate from lantana-based, tithonia-based, grass-based, and mixed (lantana + tithonia + grass)-based compost heaps after 21, 42, 63, and 84 days of composting and sequenced using the Illumina Miseq platform. Before performing statistical data analysis, we used the Divisive Amplicon Denoising Algorithm version 2 workflow for bioinformatic analyses. The composting duration, but not the composting materials, significantly influenced the total population and composition of the mesofauna communities. The composting materials and duration significantly affected the dispersion and uniqueness of the compost mesofauna communities. Canonical correspondence analysis of the compost’s physical–chemical and biological states showed a significant influence of the materials on the mesofauna community colonization capacity. The mesofauna communities had a significant response to the composting duration. This, therefore, presents them as valuable tools for understanding the temporal evolution of compost.