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On the Use of Optimal Transportation Theory to Recode Variables and Application to Database Merging

Author

Listed:
  • Gares Valérie

    (University of Rennes, INSA, CNRS, IRMAR - UMR 6625, F-35000Rennes, France)

  • Dimeglio Chloé

    (University of Toulouse III - INSERM, UMR 1027 - CHU Toulouse, Toulouse, France)

  • Guernec Grégory

    (INSERM, UMR 1027, Toulouse, France)

  • Fantin Romain

    (University of Toulouse III, Toulouse, France)

  • Lepage Benoit

    (University of Toulouse III - INSERM, UMR 1027 - CHU Toulouse, Toulouse, France)

  • Kosorok Michael R.

    (Department of Biostatistics, University of North Carolina at Chapel Hill - Chapel Hill, NC, USA)

  • Savy Nicolas

    (Toulouse Institute of MathematicsUMR C5583, Toulouse, France)

Abstract

Merging databases is a strategy of paramount interest especially in medical research. A common problem in this context comes from a variable which is not coded on the same scale in both databases we aim to merge. This paper considers the problem of finding a relevant way to recode the variable in order to merge these two databases. To address this issue, an algorithm, based on optimal transportation theory, is proposed. Optimal transportation theory gives us an application to map the measure associated with the variable in database A to the measure associated with the same variable in database B. To do so, a cost function has to be introduced and an allocation rule has to be defined. Such a function and such a rule is proposed involving the information contained in the covariates. In this paper, the method is compared to multiple imputation by chained equations and a statistical learning method and has demonstrated a better average accuracy in many situations. Applications on both simulated and real datasets show that the efficiency of the proposed merging algorithm depends on how the covariates are linked with the variable of interest.

Suggested Citation

  • Gares Valérie & Dimeglio Chloé & Guernec Grégory & Fantin Romain & Lepage Benoit & Kosorok Michael R. & Savy Nicolas, 2020. "On the Use of Optimal Transportation Theory to Recode Variables and Application to Database Merging," The International Journal of Biostatistics, De Gruyter, vol. 16(1), pages 1-16, May.
    • Handle: RePEc:bpj:ijbist:v:16:y:2020:i:1:p:16:n:8
    DOI: 10.1515/ijb-2018-0106
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