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Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics

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  • Lennox, Kristin P.
  • Dahl, David B.
  • Vannucci, Marina
  • Tsai, Jerry W.

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Suggested Citation

  • Lennox, Kristin P. & Dahl, David B. & Vannucci, Marina & Tsai, Jerry W., 2009. "Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics," Journal of the American Statistical Association, American Statistical Association, vol. 104(486), pages 586-596.
    • Handle: RePEc:bes:jnlasa:v:104:i:486:y:2009:p:586-596
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    Citations

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    Cited by:

    1. Hyun Joo & Archana G Chavan & Ryan Day & Kristin P Lennox & Paul Sukhanov & David B Dahl & Marina Vannucci & Jerry Tsai, 2011. "Near-Native Protein Loop Sampling Using Nonparametric Density Estimation Accommodating Sparcity," PLOS Computational Biology, Public Library of Science, vol. 7(10), pages 1-14, October.
    2. Abhishek Bhattacharya & David Dunson, 2012. "Strong consistency of nonparametric Bayes density estimation on compact metric spaces with applications to specific manifolds," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 64(4), pages 687-714, August.
    3. Garnett P. McMillan & Timothy E. Hanson & Gabrielle Saunders & Frederick J. Gallun, 2013. "A two-component circular regression model for repeated measures auditory localization data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 62(4), pages 515-534, August.
    4. Arthur Pewsey & Eduardo García-Portugués, 2021. "Recent advances in directional statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 1-58, March.
    5. Kanti Mardia, 2010. "Bayesian analysis for bivariate von Mises distributions," Journal of Applied Statistics, Taylor & Francis Journals, vol. 37(3), pages 515-528.
    6. Saptarshi Chakraborty & Samuel W. K. Wong, 2023. "On the circular correlation coefficients for bivariate von Mises distributions on a torus," Statistical Papers, Springer, vol. 64(2), pages 643-675, April.
    7. Daniel Ting & Guoli Wang & Maxim Shapovalov & Rajib Mitra & Michael I Jordan & Roland L Dunbrack Jr, 2010. "Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model," PLOS Computational Biology, Public Library of Science, vol. 6(4), pages 1-21, April.
    8. David B. Dahl & Ryan Day & Jerry W. Tsai, 2017. "Random Partition Distribution Indexed by Pairwise Information," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(518), pages 721-732, April.
    9. Fernández-Durán Juan José & Gregorio-Domínguez MarÍa Mercedes, 2014. "Modeling angles in proteins and circular genomes using multivariate angular distributions based on multiple nonnegative trigonometric sums," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(1), pages 1-18, February.

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