IDEAS home Printed from https://ideas.repec.org/a/ags/asagre/333601.html
   My bibliography  Save this article

Bioinformatics Analysis of Xylanase xynMF13-GH10 Gene from Mangrove Fungi

Author

Listed:
  • SONG, Junxia
  • WU, Wanting
  • QI ,Hongbing

Abstract

[Objectives] The paper was to analyze and predict the structure and characteristics of xylanase xynMF13-GH10 gene and its encoded protein. [Methods] xynMF13-GH10 gene was predicted by NCBI and various information analysis tools in ExPASy website, as well as SignaIP 5.0, DNAman, TMHMM, SOPMA and SWISS-Model, and the characteristics and functions of protein structure encoded by the gene were predicted. [Results] The gene is 1 332 bp in length, the coding region is 1-1 332 bp, and the gene encodes 443 amino acids.The xynMF13-GH10 gene has high homology with xylanase in many species, and it has the highest homology with Paraphaeosphaeria sporulosa endoxylanase-like protein, with the consistency reaching 78.91% and e-value reaching 2e-159. The secondary structure consists of 48.31% random curl, 30.25% α-helix structure, 16.70% extended chain and 4.74% β-corner. [Conclusion] The results provide a reference for revealing the physiological function and expression regulation mechanism of xynMF13-GH10 gene in the future.

Suggested Citation

  • SONG, Junxia & WU, Wanting & QI ,Hongbing, 2022. "Bioinformatics Analysis of Xylanase xynMF13-GH10 Gene from Mangrove Fungi," Asian Agricultural Research, USA-China Science and Culture Media Corporation, vol. 14(05), May.
    • Handle: RePEc:ags:asagre:333601
    DOI: 10.22004/ag.econ.333601
    as

    Download full text from publisher

    File URL: https://ageconsearch.umn.edu/record/333601/files/9.pdf
    Download Restriction: no
    File URL: https://libkey.io/10.22004/ag.econ.333601?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    More about this item

    Keywords

    Agribusiness;

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:ags:asagre:333601. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: AgEcon Search (email available below). General contact details of provider: .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.