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Using mixed hidden Markov models to examine behavioral states in a cooperatively breeding bird

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  • Ann E. McKellar
  • Roland Langrock
  • Jeffrey R. Walters
  • Dylan C. Kesler

Abstract

Movement has important consequences for individual and population-level processes, but methods are only starting to become available for quantifying fine-scale movement paths of smaller animals. New techniques for inferring behavioral states and their relation to social and environmental factors provide a powerful way to test the influence of such factors on individuals. One such technique that has recently gained popularity is the use of hidden Markov models, which link time series of movement variables and the underlying behavioral states of individuals. We used hidden Markov models to evaluate behavioral states and their relation to environmental, seasonal, and social factors in the cooperatively breeding red-cockaded woodpecker (Picoides borealis) while accounting for individual heterogeneity with discrete random effects. We identified 2 distinct behavioral states, resting and foraging, which were related to covariates in our models. Using this approach, we concluded that woodpecker step lengths tended to be longest in winter, larger groups of woodpeckers tended to spend less time foraging and more time resting when compared with smaller groups, and woodpeckers foraged more and rested less when in higher-quality habitat. Our results demonstrate the impact that social and environmental factors can have on movement in a social species and, thus, reinforce the importance of including these factors in animal movement studies. The extensions of basic hidden Markov models considered here may prove valuable in forthcoming studies that involve high-resolution tracking to understand behavior of birds and other small animals.

Suggested Citation

  • Ann E. McKellar & Roland Langrock & Jeffrey R. Walters & Dylan C. Kesler, 2015. "Using mixed hidden Markov models to examine behavioral states in a cooperatively breeding bird," Behavioral Ecology, International Society for Behavioral Ecology, vol. 26(1), pages 148-157.
  • Handle: RePEc:oup:beheco:v:26:y:2015:i:1:p:148-157.
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    File URL: http://hdl.handle.net/10.1093/beheco/aru171
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    References listed on IDEAS

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    2. Joanna M. Bagniewska & Tom Hart & Lauren A. Harrington & David W. Macdonald, 2013. "Hidden Markov analysis describes dive patterns in semiaquatic animals," Behavioral Ecology, International Society for Behavioral Ecology, vol. 24(3), pages 659-667.
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    6. Dylan C. Kesler & Jeffrey R. Walters & John J. Kappes, 2010. "Social influences on dispersal and the fat-tailed dispersal distribution in red-cockaded woodpeckers," Behavioral Ecology, International Society for Behavioral Ecology, vol. 21(6), pages 1337-1343.
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    Cited by:

    1. Toby A. Patterson & Alison Parton & Roland Langrock & Paul G. Blackwell & Len Thomas & Ruth King, 2017. "Statistical modelling of individual animal movement: an overview of key methods and a discussion of practical challenges," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 101(4), pages 399-438, October.
    2. Vianey Leos-Barajas & Eric J. Gangloff & Timo Adam & Roland Langrock & Floris M. Beest & Jacob Nabe-Nielsen & Juan M. Morales, 2017. "Multi-scale Modeling of Animal Movement and General Behavior Data Using Hidden Markov Models with Hierarchical Structures," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 22(3), pages 232-248, September.
    3. A. Parton & P. G. Blackwell, 2017. "Bayesian Inference for Multistate ‘Step and Turn’ Animal Movement in Continuous Time," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 22(3), pages 373-392, September.
    4. Michael A. Spence & Evalyne W. Muiruri & David L. Maxwell & Scott Davis & Dave Sheahan, 2021. "The application of continuous‐time Markov chain models in the analysis of choice flume experiments," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(4), pages 1103-1123, August.

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