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Projection sparse principal component analysis: An efficient least squares method

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  • Merola, Giovanni Maria
  • Chen, Gemai

Abstract

We propose a new sparse principal component analysis (SPCA) method in which the solutions are obtained by projecting the full cardinality principal components onto subsets of variables. The resulting components are guaranteed to explain a given proportion of variance. The computation of these solutions is very efficient. The proposed method compares well with the optimal least squares sparse components. We show that other SPCA methods fail to identify the best sparse approximations of the principal components and explain less variance than our solutions. We illustrate and compare our method with others with extensive simulations and with the analysis of the computational results for nine datasets of increasing dimensions up to 16,000 variables.

Suggested Citation

  • Merola, Giovanni Maria & Chen, Gemai, 2019. "Projection sparse principal component analysis: An efficient least squares method," Journal of Multivariate Analysis, Elsevier, vol. 173(C), pages 366-382.
    • Handle: RePEc:eee:jmvana:v:173:y:2019:i:c:p:366-382
    DOI: 10.1016/j.jmva.2019.04.001
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    References listed on IDEAS

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    1. Shen, Haipeng & Huang, Jianhua Z., 2008. "Sparse principal component analysis via regularized low rank matrix approximation," Journal of Multivariate Analysis, Elsevier, vol. 99(6), pages 1015-1034, July.
    2. Li, Baibing & Martin, Elaine B. & Morris, A. Julian, 2002. "On principal component analysis in L1," Computational Statistics & Data Analysis, Elsevier, vol. 40(3), pages 471-474, September.
    3. JOURNEE, Michel & NESTEROV, Yurii & RICHTARIK, Peter & SEPULCHRE, Rodolphe, 2010. "Generalized power method for sparse principal component analysis," LIDAM Reprints CORE 2232, Université catholique de Louvain, Center for Operations Research and Econometrics (CORE).
    4. Carl Eckart & Gale Young, 1936. "The approximation of one matrix by another of lower rank," Psychometrika, Springer;The Psychometric Society, vol. 1(3), pages 211-218, September.
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    Cited by:

    1. Jolliffe, Ian, 2022. "A 50-year personal journey through time with principal component analysis," Journal of Multivariate Analysis, Elsevier, vol. 188(C).

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