A complete tool set for molecular QTL discovery and analysis

Citations

Cited by:

1. Anne Senabouth & Maciej Daniszewski & Grace E. Lidgerwood & Helena H. Liang & Damián Hernández & Mehdi Mirzaei & Stacey N. Keenan & Ran Zhang & Xikun Han & Drew Neavin & Louise Rooney & Maria Isabel G, 2022. "Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
2. Nikolaos M. R. Lykoskoufis & Evarist Planet & Halit Ongen & Didier Trono & Emmanouil T. Dermitzakis, 2024. "Transposable elements mediate genetic effects altering the expression of nearby genes in colorectal cancer," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
3. Tina Roostaei & Hans-Ulrich Klein & Yiyi Ma & Daniel Felsky & Pia Kivisäkk & Sarah M. Connor & Alexandra Kroshilina & Christina Yung & Belinda J. Kaskow & Xiaorong Shao & Brooke Rhead & José M. Ordová, 2021. "Proximal and distal effects of genetic susceptibility to multiple sclerosis on the T cell epigenome," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
4. Satria P. Sajuthi & Jamie L. Everman & Nathan D. Jackson & Benjamin Saef & Cydney L. Rios & Camille M. Moore & Angel C. Y. Mak & Celeste Eng & Ana Fairbanks-Mahnke & Sandra Salazar & Jennifer Elhawary, 2022. "Nasal airway transcriptome-wide association study of asthma reveals genetically driven mucus pathobiology," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
5. M. A. Zouache & B. T. Richards & C. M. Pappas & R. A. Anstadt & J. Liu & T. Corsetti & S. Matthews & N. A. Seager & S. Schmitz-Valckenberg & M. Fleckenstein & W. C. Hubbard & J. Thomas & J. L. Hageman, 2024. "Levels of complement factor H-related 4 protein do not influence susceptibility to age-related macular degeneration or its course of progression," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
6. Elizabeth C. Goode & Laura Fachal & Nikolaos Panousis & Loukas Moutsianas & Rebecca E. McIntyre & Benjamin Yu Hang Bai & Norihito Kawasaki & Alexandra Wittmann & Tim Raine & Simon M. Rushbrook & Carl , 2024. "Fine-mapping and molecular characterisation of primary sclerosing cholangitis genetic risk loci," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
7. Anneke Brümmer & Sven Bergmann, 2024. "Disentangling genetic effects on transcriptional and post-transcriptional gene regulation through integrating exon and intron expression QTLs," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
8. Seyoun Byun & Jacqueline Shine & Philip Coryell & Nicole E. Kramer & Susan D’Costa & Eliza Thulson & Sylvie M. Parkus & Susan Chubinskaya & Richard F. Loeser & Brian O. Diekman & Douglas H. Phanstiel, 2025. "Response splicing quantitative trait loci in primary human chondrocytes identify putative osteoarthritis risk genes," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
9. Andrew A. Brown & Juan J. Fernandez-Tajes & Mun-gwan Hong & Caroline A. Brorsson & Robert W. Koivula & David Davtian & Théo Dupuis & Ambra Sartori & Theodora-Dafni Michalettou & Ian M. Forgie & Jonath, 2023. "Genetic analysis of blood molecular phenotypes reveals common properties in the regulatory networks affecting complex traits," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
10. Lianting Fu & Jieyi Chen & Da Lian & Siyuan Du & Dongya Wu & Chentao Yang & Ziyi Wang & Hongyi Ma & Zhengtong Li & Nicole J. Lake & Xiangyu Yang & Yongyong Shi & Guojie Zhang & Kaiyue Ma & Yafei Mao, 2026. "A long-read human pangenome initiative for comprehensive interpretation of nuclear-embedded mitochondrial DNA," Nature Communications, Nature, vol. 17(1), pages 1-14, December.
11. Qiuman Liang & Yi Jiang & Annie W. Shieh & Dan Zhou & Rui Chen & Feiran Wang & Meng Xu & Mingming Niu & Xusheng Wang & Dalila Pinto & Yue Wang & Lijun Cheng & Ramu Vadukapuram & Chunling Zhang & Kay G, 2025. "Impact of common variants on brain gene expression from RNA to protein to schizophrenia risk," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
12. Zhao Wang & Qian Liang & Xinyi Qian & Bolang Hu & Zhanye Zheng & Jianhua Wang & Yuelin Hu & Zhengkai Bao & Ke Zhao & Yao Zhou & Xiangling Feng & Xianfu Yi & Jin Li & Jiandang Shi & Zhe Liu & Jihui Hao, 2023. "An autoimmune pleiotropic SNP modulates IRF5 alternative promoter usage through ZBTB3-mediated chromatin looping," Nature Communications, Nature, vol. 14(1), pages 1-23, December.
13. Isar Nassiri & James J. Gilchrist & Orion Tong & Evelyn Lau & Sara Danielli & Hussein Al Mossawi & Matthew J. Neville & Julian C. Knight & Benjamin P. Fairfax, 2025. "Genetic determinants of monocyte splicing are enriched for disease susceptibility loci," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
14. Taehyeung Kim & Marta Martínez-Bonet & Qiang Wang & Nicolaj Hackert & Jeffrey A. Sparks & Yuriy Baglaenko & Byunghee Koh & Roxane Darbousset & Raquel Laza-Briviesca & Xiaoting Chen & Vitor R. C. Aguia, 2024. "Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
15. Ruize Liu & Tzu-Ting Chen & Yan Xia & Shu-Chin Lin & Tian Ge & Chia-Yen Chen & Yen-Chen Anne Feng & Hailiang Huang & Yen-Feng Lin, 2026. "Genetic regulation of methylation across East Asian and European populations," Nature Communications, Nature, vol. 17(1), pages 1-12, December.
16. Nikolaos I. Panousis & Omar El Garwany & Andrew Knights & Jesse Cheruiyot Rop & Natsuhiko Kumasaka & Maria Imaz & Lorena Boquete Vilarino & Anthi Tsingene & Alex Tokolyi & Alice Barnett & Celine Gomez, 2025. "Gene expression QTL mapping in stimulated iPSC-derived macrophages provides insights into common complex diseases," Nature Communications, Nature, vol. 16(1), pages 1-11, December.
17. Kensuke Yamaguchi & Kazuyoshi Ishigaki & Akari Suzuki & Yumi Tsuchida & Haruka Tsuchiya & Shuji Sumitomo & Yasuo Nagafuchi & Fuyuki Miya & Tatsuhiko Tsunoda & Hirofumi Shoda & Keishi Fujio & Kazuhiko , 2022. "Splicing QTL analysis focusing on coding sequences reveals mechanisms for disease susceptibility loci," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
18. Gabriel E. Rech & Santiago Radío & Sara Guirao-Rico & Laura Aguilera & Vivien Horvath & Llewellyn Green & Hannah Lindstadt & Véronique Jamilloux & Hadi Quesneville & Josefa González, 2022. "Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
19. Antje Häder & Sascha Schäuble & Jan Gehlen & Nadja Thielemann & Benedikt C. Buerfent & Vitalia Schüller & Timo Hess & Thomas Wolf & Julia Schröder & Michael Weber & Kerstin Hünniger & Jürgen Löffler &, 2023. "Pathogen-specific innate immune response patterns are distinctly affected by genetic diversity," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
20. Fasil Tekola-Ayele & Xuehuo Zeng & Suvo Chatterjee & Marion Ouidir & Corina Lesseur & Ke Hao & Jia Chen & Markos Tesfaye & Carmen J. Marsit & Tsegaselassie Workalemahu & Ronald Wapner, 2022. "Placental multi-omics integration identifies candidate functional genes for birthweight," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
21. James J. Gilchrist & Seiko Makino & Vivek Naranbhai & Piyush K. Sharma & Surya Koturan & Orion Tong & Chelsea A. Taylor & Robert A. Watson & Alba Verge los Aires & Rosalin Cooper & Evelyn Lau & Sara D, 2022. "Natural Killer cells demonstrate distinct eQTL and transcriptome-wide disease associations, highlighting their role in autoimmunity," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
22. Xena Marie Mapel & Naveen Kumar Kadri & Alexander S. Leonard & Qiongyu He & Audald Lloret-Villas & Meenu Bhati & Maya Hiltpold & Hubert Pausch, 2024. "Molecular quantitative trait loci in reproductive tissues impact male fertility in cattle," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
23. Sébastien Thériault & Zhonglin Li & Erik Abner & Jian’an Luan & Hasanga D. Manikpurage & Ursula Houessou & Pardis Zamani & Mewen Briend & Dominique K. Boudreau & Nathalie Gaudreault & Lily Frenette & , 2024. "Integrative genomic analyses identify candidate causal genes for calcific aortic valve stenosis involving tissue-specific regulation," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
24. Miguel Rodriguez de los Santos & Brian H. Kopell & Ariela Buxbaum Grice & Gauri Ganesh & Andy Yang & Pardis Amini & Lora E. Liharska & Eric Vornholt & John F. Fullard & Pengfei Dong & Eric Park & Sara, 2024. "Divergent landscapes of A-to-I editing in postmortem and living human brain," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
25. Jamie L. Everman & Satria P. Sajuthi & Maude A. Liegeois & Nathan D. Jackson & Erik H. Collet & Michael C. Peters & Maurizio Chioccioli & Camille M. Moore & Bhavika B. Patel & Nathan Dyjack & Roger Po, 2024. "A common polymorphism in the Intelectin-1 gene influences mucus plugging in severe asthma," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
26. Nina C. Nishiyama & Sophie Silverstein & Kimberly Darlington & Meaghan M. Kennedy Ng & Katelyn M. Clough & Mikaela Bauer & Caroline Beasley & Akshatha Bharadwaj & Rajee Ganesan & Muneera R. Kapadia & , 2026. "eQTL in diseased colon tissue identifies potential target genes associated with IBD," Nature Communications, Nature, vol. 17(1), pages 1-15, December.
27. Jayshree Advani & Puja A. Mehta & Andrew R. Hamel & Sudeep Mehrotra & Christina Kiel & Tobias Strunz & Ximena Corso-Díaz & Madeline Kwicklis & Freekje Asten & Rinki Ratnapriya & Emily Y. Chew & Dena G, 2024. "QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration," Nature Communications, Nature, vol. 15(1), pages 1-20, December.