IDEAS home Printed from https://ideas.repec.org/a/spr/compst/v38y2023i3d10.1007_s00180-022-01265-w.html
   My bibliography  Save this article

Sparse precision matrix estimation with missing observations

Author

Listed:
  • Ning Zhang

    (Dongguan University of Technology)

  • Jin Yang

    (Dongguan University of Technology)

Abstract

Sparse Gaussian graphical models have been extensively applied to detect the conditional independence structures from fully observed data. However, datasets with missing observations are quite common in many practical fields. In this paper, we propose a robust Gaussian graphical model with the covariance matrix being estimated from the partially observed data. We prove that the inverse of the Karush–Kuhn–Tucker mapping associated with the proposed model satisfies the calmness condition automatically. We also apply a linearly convergent alternating direction method of multipliers to find the solution to the proposed model. The numerical performance is evaluated on both the synthetic data and real data sets.

Suggested Citation

  • Ning Zhang & Jin Yang, 2023. "Sparse precision matrix estimation with missing observations," Computational Statistics, Springer, vol. 38(3), pages 1337-1355, September.
  • Handle: RePEc:spr:compst:v:38:y:2023:i:3:d:10.1007_s00180-022-01265-w
    DOI: 10.1007/s00180-022-01265-w
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s00180-022-01265-w
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s00180-022-01265-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Jian Guo & Elizaveta Levina & George Michailidis & Ji Zhu, 2011. "Joint estimation of multiple graphical models," Biometrika, Biometrika Trust, vol. 98(1), pages 1-15.
    2. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    3. J. J. Ye & X. Y. Ye, 1997. "Necessary Optimality Conditions for Optimization Problems with Variational Inequality Constraints," Mathematics of Operations Research, INFORMS, vol. 22(4), pages 977-997, November.
    4. Deren Han & Defeng Sun & Liwei Zhang, 2018. "Linear Rate Convergence of the Alternating Direction Method of Multipliers for Convex Composite Programming," Mathematics of Operations Research, INFORMS, vol. 43(2), pages 622-637, May.
    5. Park, Seongoh & Lim, Johan, 2019. "Non-asymptotic rate for high-dimensional covariance estimation with non-independent missing observations," Statistics & Probability Letters, Elsevier, vol. 153(C), pages 113-123.
    6. Ming Yuan & Yi Lin, 2007. "Model selection and estimation in the Gaussian graphical model," Biometrika, Biometrika Trust, vol. 94(1), pages 19-35.
    7. Jianqing Fan & Yuan Liao & Han Liu, 2016. "An overview of the estimation of large covariance and precision matrices," Econometrics Journal, Royal Economic Society, vol. 19(1), pages 1-32, February.
    8. Ting Wang & Zhao Ren & Ying Ding & Zhou Fang & Zhe Sun & Matthew L MacDonald & Robert A Sweet & Jieru Wang & Wei Chen, 2016. "FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks," PLOS Computational Biology, Public Library of Science, vol. 12(2), pages 1-16, February.
    9. Defeng Sun, 2006. "The Strong Second-Order Sufficient Condition and Constraint Nondegeneracy in Nonlinear Semidefinite Programming and Their Implications," Mathematics of Operations Research, INFORMS, vol. 31(4), pages 761-776, November.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Huangdi Yi & Qingzhao Zhang & Cunjie Lin & Shuangge Ma, 2022. "Information‐incorporated Gaussian graphical model for gene expression data," Biometrics, The International Biometric Society, vol. 78(2), pages 512-523, June.
    2. Lam, Clifford, 2020. "High-dimensional covariance matrix estimation," LSE Research Online Documents on Economics 101667, London School of Economics and Political Science, LSE Library.
    3. Khai X. Chiong & Hyungsik Roger Moon, 2017. "Estimation of Graphical Models using the $L_{1,2}$ Norm," Papers 1709.10038, arXiv.org, revised Oct 2017.
    4. Ziqi Chen & Chenlei Leng, 2016. "Dynamic Covariance Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(515), pages 1196-1207, July.
    5. Shan, Liang & Kim, Inyoung, 2018. "Joint estimation of multiple Gaussian graphical models across unbalanced classes," Computational Statistics & Data Analysis, Elsevier, vol. 121(C), pages 89-103.
    6. Jianyu Liu & Wei Sun & Yufeng Liu, 2019. "Joint skeleton estimation of multiple directed acyclic graphs for heterogeneous population," Biometrics, The International Biometric Society, vol. 75(1), pages 36-47, March.
    7. Kevin H. Lee & Qian Chen & Wayne S. DeSarbo & Lingzhou Xue, 2022. "Estimating Finite Mixtures of Ordinal Graphical Models," Psychometrika, Springer;The Psychometric Society, vol. 87(1), pages 83-106, March.
    8. McGillivray, Annaliza & Khalili, Abbas & Stephens, David A., 2020. "Estimating sparse networks with hubs," Journal of Multivariate Analysis, Elsevier, vol. 179(C).
    9. Lam, Clifford, 2008. "Estimation of large precision matrices through block penalization," LSE Research Online Documents on Economics 31543, London School of Economics and Political Science, LSE Library.
    10. Benjamin Poignard & Manabu Asai, 2023. "Estimation of high-dimensional vector autoregression via sparse precision matrix," The Econometrics Journal, Royal Economic Society, vol. 26(2), pages 307-326.
    11. Dong Liu & Changwei Zhao & Yong He & Lei Liu & Ying Guo & Xinsheng Zhang, 2023. "Simultaneous cluster structure learning and estimation of heterogeneous graphs for matrix‐variate fMRI data," Biometrics, The International Biometric Society, vol. 79(3), pages 2246-2259, September.
    12. Mehran Aflakparast & Mathisca de Gunst & Wessel van Wieringen, 2020. "Analysis of Twitter data with the Bayesian fused graphical lasso," PLOS ONE, Public Library of Science, vol. 15(7), pages 1-28, July.
    13. Byol Kim & Song Liu & Mladen Kolar, 2021. "Two‐sample inference for high‐dimensional Markov networks," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(5), pages 939-962, November.
    14. Yan Zhang & Jiyuan Tao & Zhixiang Yin & Guoqiang Wang, 2022. "Improved Large Covariance Matrix Estimation Based on Efficient Convex Combination and Its Application in Portfolio Optimization," Mathematics, MDPI, vol. 10(22), pages 1-15, November.
    15. Zeyu Wu & Cheng Wang & Weidong Liu, 2023. "A unified precision matrix estimation framework via sparse column-wise inverse operator under weak sparsity," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 75(4), pages 619-648, August.
    16. Christine Peterson & Francesco C. Stingo & Marina Vannucci, 2015. "Bayesian Inference of Multiple Gaussian Graphical Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(509), pages 159-174, March.
    17. Claudia Angelini & Daniela De Canditiis & Anna Plaksienko, 2021. "Jewel : A Novel Method for Joint Estimation of Gaussian Graphical Models," Mathematics, MDPI, vol. 9(17), pages 1-24, August.
    18. Lichun Wang & Yuan You & Heng Lian, 2015. "Convergence and sparsity of Lasso and group Lasso in high-dimensional generalized linear models," Statistical Papers, Springer, vol. 56(3), pages 819-828, August.
    19. Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
    20. Zhou, Jia & Li, Yang & Zheng, Zemin & Li, Daoji, 2022. "Reproducible learning in large-scale graphical models," Journal of Multivariate Analysis, Elsevier, vol. 189(C).

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:compst:v:38:y:2023:i:3:d:10.1007_s00180-022-01265-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.