IDEAS home Printed from https://ideas.repec.org/a/spr/compst/v35y2020i2d10.1007_s00180-019-00903-0.html
   My bibliography  Save this article

Simple Poisson PCA: an algorithm for (sparse) feature extraction with simultaneous dimension determination

Author

Listed:
  • Luke Smallman

    (Cardiff University)

  • William Underwood

    (University of Oxford)

  • Andreas Artemiou

    (Cardiff University)

Abstract

Dimension reduction tools offer a popular approach to analysis of high-dimensional big data. In this paper, we propose an algorithm for sparse Principal Component Analysis for non-Gaussian data. Since our interest for the algorithm stems from applications in text data analysis we focus on the Poisson distribution which has been used extensively in analysing text data. In addition to sparsity our algorithm is able to effectively determine the desired number of principal components in the model (order determination). The good performance of our proposal is demonstrated with both synthetic and real data examples.

Suggested Citation

  • Luke Smallman & William Underwood & Andreas Artemiou, 2020. "Simple Poisson PCA: an algorithm for (sparse) feature extraction with simultaneous dimension determination," Computational Statistics, Springer, vol. 35(2), pages 559-577, June.
    • Handle: RePEc:spr:compst:v:35:y:2020:i:2:d:10.1007_s00180-019-00903-0
    DOI: 10.1007/s00180-019-00903-0
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s00180-019-00903-0
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.
    File URL: https://libkey.io/10.1007/s00180-019-00903-0?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Michael E. Tipping & Christopher M. Bishop, 1999. "Probabilistic Principal Component Analysis," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(3), pages 611-622.
    2. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    3. Florian Frommlet & Grégory Nuel, 2016. "An Adaptive Ridge Procedure for L0 Regularization," PLOS ONE, Public Library of Science, vol. 11(2), pages 1-23, February.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Takumi Saegusa & Tianzhou Ma & Gang Li & Ying Qing Chen & Mei-Ling Ting Lee, 2020. "Variable Selection in Threshold Regression Model with Applications to HIV Drug Adherence Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 12(3), pages 376-398, December.
    2. Zhao, Hui & Sun, Dayu & Li, Gang & Sun, Jianguo, 2019. "Simultaneous estimation and variable selection for incomplete event history studies," Journal of Multivariate Analysis, Elsevier, vol. 171(C), pages 350-361.
    3. Ng, Serena, 2013. "Variable Selection in Predictive Regressions," Handbook of Economic Forecasting, in: G. Elliott & C. Granger & A. Timmermann (ed.), Handbook of Economic Forecasting, edition 1, volume 2, chapter 0, pages 752-789, Elsevier.
    4. Antonis Christou & Andreas Artemiou, 2023. "Adaptive L0 Regularization for Sparse Support Vector Regression," Mathematics, MDPI, vol. 11(13), pages 1-12, June.
    5. Jian Huang & Yuling Jiao & Lican Kang & Jin Liu & Yanyan Liu & Xiliang Lu, 2022. "GSDAR: a fast Newton algorithm for $$\ell _0$$ ℓ 0 regularized generalized linear models with statistical guarantee," Computational Statistics, Springer, vol. 37(1), pages 507-533, March.
    6. Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
    7. Guan, Wei & Gray, Alexander, 2013. "Sparse high-dimensional fractional-norm support vector machine via DC programming," Computational Statistics & Data Analysis, Elsevier, vol. 67(C), pages 136-148.
    8. Margherita Giuzio, 2017. "Genetic algorithm versus classical methods in sparse index tracking," Decisions in Economics and Finance, Springer;Associazione per la Matematica, vol. 40(1), pages 243-256, November.
    9. Chang, Jinyuan & Chen, Song Xi & Chen, Xiaohong, 2015. "High dimensional generalized empirical likelihood for moment restrictions with dependent data," Journal of Econometrics, Elsevier, vol. 185(1), pages 283-304.
    10. Xu, Yang & Zhao, Shishun & Hu, Tao & Sun, Jianguo, 2021. "Variable selection for generalized odds rate mixture cure models with interval-censored failure time data," Computational Statistics & Data Analysis, Elsevier, vol. 156(C).
    11. Alexandre Belloni & Victor Chernozhukov & Denis Chetverikov & Christian Hansen & Kengo Kato, 2018. "High-dimensional econometrics and regularized GMM," CeMMAP working papers CWP35/18, Centre for Microdata Methods and Practice, Institute for Fiscal Studies.
    12. Emmanouil Androulakis & Christos Koukouvinos & Kalliopi Mylona & Filia Vonta, 2010. "A real survival analysis application via variable selection methods for Cox's proportional hazards model," Journal of Applied Statistics, Taylor & Francis Journals, vol. 37(8), pages 1399-1406.
    13. Meng An & Haixiang Zhang, 2023. "High-Dimensional Mediation Analysis for Time-to-Event Outcomes with Additive Hazards Model," Mathematics, MDPI, vol. 11(24), pages 1-11, December.
    14. Hao Wang & Hao Zeng & Jiashan Wang, 2022. "An extrapolated iteratively reweighted $$\ell _1$$ ℓ 1 method with complexity analysis," Computational Optimization and Applications, Springer, vol. 83(3), pages 967-997, December.
    15. Lili Pan & Ziyan Luo & Naihua Xiu, 2017. "Restricted Robinson Constraint Qualification and Optimality for Cardinality-Constrained Cone Programming," Journal of Optimization Theory and Applications, Springer, vol. 175(1), pages 104-118, October.
    16. Michael Hintermüller & Tao Wu, 2014. "A superlinearly convergent R-regularized Newton scheme for variational models with concave sparsity-promoting priors," Computational Optimization and Applications, Springer, vol. 57(1), pages 1-25, January.
    17. Wang, Zihan & Daeipour, Mohamad & Xu, Hongyi, 2023. "Quantification and propagation of Aleatoric uncertainties in topological structures," Reliability Engineering and System Safety, Elsevier, vol. 233(C).
    18. Anastasiou, Andreas & Cribben, Ivor & Fryzlewicz, Piotr, 2022. "Cross-covariance isolate detect: a new change-point method for estimating dynamic functional connectivity," LSE Research Online Documents on Economics 112148, London School of Economics and Political Science, LSE Library.
    19. Ni, Xiao & Zhang, Hao Helen & Zhang, Daowen, 2009. "Automatic model selection for partially linear models," Journal of Multivariate Analysis, Elsevier, vol. 100(9), pages 2100-2111, October.
    20. Jun Yan & Jian Huang, 2012. "Model Selection for Cox Models with Time-Varying Coefficients," Biometrics, The International Biometric Society, vol. 68(2), pages 419-428, June.

    More about this item

    Keywords

    L0 penalty; Exponential family; Text data analysis; Dimension reduction;
    All these keywords.

    JEL classification:

    • L0 - Industrial Organization - - General

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:compst:v:35:y:2020:i:2:d:10.1007_s00180-019-00903-0. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.