IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-46871-y.html
   My bibliography  Save this article

ATP-free in vitro biotransformation of starch-derived maltodextrin into poly-3-hydroxybutyrate via acetyl-CoA

Author

Listed:
  • Xinlei Wei

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Xue Yang

    (Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Congcong Hu

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Ministry of Education, Tianjin Industrial Microbiology Key Laboratory, College of Biotechnology, Tianjin University of Science and Technology)

  • Qiangzi Li

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Shijingshan District)

  • Qianqian Liu

    (Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Yue Wu

    (Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Leipeng Xie

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Xiao Ning

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Shijingshan District)

  • Fei Li

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Tao Cai

    (Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Zhiguang Zhu

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Shijingshan District
    National Technology Innovation Center of Synthetic Biology)

  • Yi-Heng P. Job Zhang

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Shijingshan District
    National Technology Innovation Center of Synthetic Biology)

  • Yanfei Zhang

    (Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Shijingshan District
    National Technology Innovation Center of Synthetic Biology)

  • Xuejun Chen

    (Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area)

  • Chun You

    (Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area
    Shijingshan District
    National Technology Innovation Center of Synthetic Biology)

Abstract

In vitro biotransformation (ivBT) facilitated by in vitro synthetic enzymatic biosystems (ivSEBs) has emerged as a highly promising biosynthetic platform. Several ivSEBs have been constructed to produce poly-3-hydroxybutyrate (PHB) via acetyl-coenzyme A (acetyl-CoA). However, some systems are hindered by their reliance on costly ATP, limiting their practicality. This study presents the design of an ATP-free ivSEB for one-pot PHB biosynthesis via acetyl-CoA utilizing starch-derived maltodextrin as the sole substrate. Stoichiometric analysis indicates this ivSEB can self-maintain NADP+/NADPH balance and achieve a theoretical molar yield of 133.3%. Leveraging simple one-pot reactions, our ivSEBs achieved a near-theoretical molar yield of 125.5%, the highest PHB titer (208.3 mM, approximately 17.9 g/L) and the fastest PHB production rate (9.4 mM/h, approximately 0.8 g/L/h) among all the reported ivSEBs to date, and demonstrated easy scalability. This study unveils the promising potential of ivBT for the industrial-scale production of PHB and other acetyl-CoA-derived chemicals from starch.

Suggested Citation

  • Xinlei Wei & Xue Yang & Congcong Hu & Qiangzi Li & Qianqian Liu & Yue Wu & Leipeng Xie & Xiao Ning & Fei Li & Tao Cai & Zhiguang Zhu & Yi-Heng P. Job Zhang & Yanfei Zhang & Xuejun Chen & Chun You, 2024. "ATP-free in vitro biotransformation of starch-derived maltodextrin into poly-3-hydroxybutyrate via acetyl-CoA," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-46871-y
    DOI: 10.1038/s41467-024-46871-y
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-46871-y
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-46871-y?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Meaghan A. Valliere & Tyler P. Korman & Nicholas B. Woodall & Gregory A. Khitrov & Robert E. Taylor & David Baker & James U. Bowie, 2019. "A cell-free platform for the prenylation of natural products and application to cannabinoid production," Nature Communications, Nature, vol. 10(1), pages 1-9, December.
    2. Tyler P. Korman & Paul H. Opgenorth & James U. Bowie, 2017. "A synthetic biochemistry platform for cell free production of monoterpenes from glucose," Nature Communications, Nature, vol. 8(1), pages 1-8, August.
    3. Paul H. Opgenorth & Tyler P. Korman & James U. Bowie, 2014. "A synthetic biochemistry molecular purge valve module that maintains redox balance," Nature Communications, Nature, vol. 5(1), pages 1-8, September.
    4. Igor W. Bogorad & Tzu-Shyang Lin & James C. Liao, 2013. "Synthetic non-oxidative glycolysis enables complete carbon conservation," Nature, Nature, vol. 502(7473), pages 693-697, October.
    5. Hongyuan Lu & Daniel J. Diaz & Natalie J. Czarnecki & Congzhi Zhu & Wantae Kim & Raghav Shroff & Daniel J. Acosta & Bradley R. Alexander & Hannah O. Cole & Yan Zhang & Nathaniel A. Lynd & Andrew D. El, 2022. "Machine learning-aided engineering of hydrolases for PET depolymerization," Nature, Nature, vol. 604(7907), pages 662-667, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Qian Kang & Huan Fang & Mengjie Xiang & Kaixing Xiao & Pingtao Jiang & Chun You & Sang Yup Lee & Dawei Zhang, 2023. "A synthetic cell-free 36-enzyme reaction system for vitamin B12 production," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    2. Teng Bao & Yuanchao Qian & Yongping Xin & James J. Collins & Ting Lu, 2023. "Engineering microbial division of labor for plastic upcycling," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    3. Noelia Ferruz & Steffen Schmidt & Birte Höcker, 2022. "ProtGPT2 is a deep unsupervised language model for protein design," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    4. Hwaseok Hong & Dongwoo Ki & Hogyun Seo & Jiyoung Park & Jaewon Jang & Kyung-Jin Kim, 2023. "Discovery and rational engineering of PET hydrolase with both mesophilic and thermophilic PET hydrolase properties," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Zhuozhi Chen & Rongdi Duan & Yunjie Xiao & Yi Wei & Hanxiao Zhang & Xinzhao Sun & Shen Wang & Yingying Cheng & Xue Wang & Shanwei Tong & Yunxiao Yao & Cheng Zhu & Haitao Yang & Yanyan Wang & Zefang Wa, 2022. "Biodegradation of highly crystallized poly(ethylene terephthalate) through cell surface codisplay of bacterial PETase and hydrophobin," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    6. Katarzyna Świderek & Susana Velasco-Lozano & Miquel À. Galmés & Ion Olazabal & Haritz Sardon & Fernando López-Gallego & Vicent Moliner, 2023. "Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    7. Anni Li & Yijie Sheng & Haiyang Cui & Minghui Wang & Luxuan Wu & Yibo Song & Rongrong Yang & Xiujuan Li & He Huang, 2023. "Discovery and mechanism-guided engineering of BHET hydrolases for improved PET recycling and upcycling," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    8. Youying Mu & Chengzhuo Duan & Xin Li & Yongbo Wu, 2023. "A Monitoring Method for Corporate Environmental Performance Based on Data Fusion in China under the Double Carbon Target," Sustainability, MDPI, vol. 15(12), pages 1-16, June.
    9. P. Konstantin Richter & Paula Blázquez-Sánchez & Ziyue Zhao & Felipe Engelberger & Christian Wiebeler & Georg Künze & Ronny Frank & Dana Krinke & Emanuele Frezzotti & Yuliia Lihanova & Patricia Falken, 2023. "Structure and function of the metagenomic plastic-degrading polyester hydrolase PHL7 bound to its product," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    10. Likun Guo & Min Liu & Yujia Bi & Qingsheng Qi & Mo Xian & Guang Zhao, 2023. "Using a synthetic machinery to improve carbon yield with acetylphosphate as the core," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    11. Yinglu Cui & Yanchun Chen & Jinyuan Sun & Tong Zhu & Hua Pang & Chunli Li & Wen-Chao Geng & Bian Wu, 2024. "Computational redesign of a hydrolase for nearly complete PET depolymerization at industrially relevant high-solids loading," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    12. Daniela Vergara & Reggie Gaudino & Thomas Blank & Brian Keegan, 2020. "Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypes," PLOS ONE, Public Library of Science, vol. 15(9), pages 1-17, September.
    13. Itai Levin & Mengjie Liu & Christopher A. Voigt & Connor W. Coley, 2022. "Merging enzymatic and synthetic chemistry with computational synthesis planning," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    14. Chen, Hong-Ge & Zhang, Y.-H. Percival, 2015. "New biorefineries and sustainable agriculture: Increased food, biofuels, and ecosystem security," Renewable and Sustainable Energy Reviews, Elsevier, vol. 47(C), pages 117-132.
    15. Tong Wu & Paul A. Gómez-Coronado & Armin Kubis & Steffen N. Lindner & Philippe Marlière & Tobias J. Erb & Arren Bar-Even & Hai He, 2023. "Engineering a synthetic energy-efficient formaldehyde assimilation cycle in Escherichia coli," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    16. Simon d’Oelsnitz & Daniel J. Diaz & Wantae Kim & Daniel J. Acosta & Tyler L. Dangerfield & Mason W. Schechter & Matthew B. Minus & James R. Howard & Hannah Do & James M. Loy & Hal S. Alper & Y. Jessie, 2024. "Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    17. Shunshi Kohyama & Béla P. Frohn & Leon Babl & Petra Schwille, 2024. "Machine learning-aided design and screening of an emergent protein function in synthetic cells," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-46871-y. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.