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Porous borders at the wild-crop interface promote weed adaptation in Southeast Asia

Author

Listed:
  • Lin-Feng Li

    (Sun Yat-sen University
    Fudan University
    Washington University in St. Louis)

  • Tonapha Pusadee

    (Chiang Mai University)

  • Marshall J. Wedger

    (Washington University in St. Louis)

  • Ya-Ling Li

    (Sun Yat-sen University)

  • Ming-Rui Li

    (Sun Yat-sen University)

  • Yee-Ling Lau

    (University Malaya)

  • Soo-Joo Yap

    (Codon Genomics)

  • Sansanee Jamjod

    (Chiang Mai University)

  • Benjavan Rerkasem

    (Chiang Mai University)

  • Yan Hao

    (Fudan University)

  • Beng-Kah Song

    (Monash University Malaysia)

  • Kenneth M. Olsen

    (Washington University in St. Louis)

Abstract

High reproductive compatibility between crops and their wild relatives can provide benefits for crop breeding but also poses risks for agricultural weed evolution. Weedy rice is a feral relative of rice that infests paddies and causes severe crop losses worldwide. In regions of tropical Asia where the wild progenitor of rice occurs, weedy rice could be influenced by hybridization with the wild species. Genomic analysis of this phenomenon has been very limited. Here we use whole genome sequence analyses of 217 wild, weedy and cultivated rice samples to show that wild rice hybridization has contributed substantially to the evolution of Southeast Asian weedy rice, with some strains acquiring weed-adaptive traits through introgression from the wild progenitor. Our study highlights how adaptive introgression from wild species can contribute to agricultural weed evolution, and it provides a case study of parallel evolution of weediness in independently-evolved strains of a weedy crop relative.

Suggested Citation

  • Lin-Feng Li & Tonapha Pusadee & Marshall J. Wedger & Ya-Ling Li & Ming-Rui Li & Yee-Ling Lau & Soo-Joo Yap & Sansanee Jamjod & Benjavan Rerkasem & Yan Hao & Beng-Kah Song & Kenneth M. Olsen, 2024. "Porous borders at the wild-crop interface promote weed adaptation in Southeast Asia," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45447-0
    DOI: 10.1038/s41467-024-45447-0
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    References listed on IDEAS

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    1. Xuehui Huang & Nori Kurata & Xinghua Wei & Zi-Xuan Wang & Ahong Wang & Qiang Zhao & Yan Zhao & Kunyan Liu & Hengyun Lu & Wenjun Li & Yunli Guo & Yiqi Lu & Congcong Zhou & Danlin Fan & Qijun Weng & Chu, 2012. "A map of rice genome variation reveals the origin of cultivated rice," Nature, Nature, vol. 490(7421), pages 497-501, October.
    2. Jie Qiu & Yongjun Zhou & Lingfeng Mao & Chuyu Ye & Weidi Wang & Jianping Zhang & Yongyi Yu & Fei Fu & Yunfei Wang & Feijian Qian & Ting Qi & Sanling Wu & Most Humaira Sultana & Ya-Nan Cao & Yu Wang & , 2017. "Genomic variation associated with local adaptation of weedy rice during de-domestication," Nature Communications, Nature, vol. 8(1), pages 1-12, August.
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