IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-41804-7.html
   My bibliography  Save this article

Cryo-EM structure of severe fever with thrombocytopenia syndrome virus

Author

Listed:
  • Shouwen Du

    (Scientific Observation and Experiment Station of Veterinary Drugs and Diagnostic Techniques of Guangdong Province, Ministry of Agriculture and Rural Affairs, Institute of Animal Health, Guangdong Academy of Agricultural Sciences
    Southern University of Science and Technology
    The First Hospital of Jilin University)

  • Ruchao Peng

    (University of Pennsylvania)

  • Wang Xu

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Xiaoyun Qu

    (Scientific Observation and Experiment Station of Veterinary Drugs and Diagnostic Techniques of Guangdong Province, Ministry of Agriculture and Rural Affairs, Institute of Animal Health, Guangdong Academy of Agricultural Sciences
    South China Agricultural University)

  • Yuhang Wang

    (Southern University of Science and Technology)

  • Jiamin Wang

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Letian Li

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Mingyao Tian

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Yudong Guan

    (Southern University of Science and Technology)

  • Jigang Wang

    (Southern University of Science and Technology)

  • Guoqing Wang

    (The First Hospital of Jilin University)

  • Hao Li

    (Beijing Institute of Microbiology and Epidemiology)

  • Lingcong Deng

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Xiaoshuang Shi

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Yidan Ma

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Fengting Liu

    (Southern University of Science and Technology)

  • Minhua Sun

    (Scientific Observation and Experiment Station of Veterinary Drugs and Diagnostic Techniques of Guangdong Province, Ministry of Agriculture and Rural Affairs, Institute of Animal Health, Guangdong Academy of Agricultural Sciences)

  • Zhengkai Wei

    (Scientific Observation and Experiment Station of Veterinary Drugs and Diagnostic Techniques of Guangdong Province, Ministry of Agriculture and Rural Affairs, Institute of Animal Health, Guangdong Academy of Agricultural Sciences)

  • Ningyi Jin

    (Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

  • Wei Liu

    (Beijing Institute of Microbiology and Epidemiology)

  • Jianxun Qi

    (Institute of Microbiology, Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Quan Liu

    (Scientific Observation and Experiment Station of Veterinary Drugs and Diagnostic Techniques of Guangdong Province, Ministry of Agriculture and Rural Affairs, Institute of Animal Health, Guangdong Academy of Agricultural Sciences
    The First Hospital of Jilin University
    Foshan University)

  • Ming Liao

    (Scientific Observation and Experiment Station of Veterinary Drugs and Diagnostic Techniques of Guangdong Province, Ministry of Agriculture and Rural Affairs, Institute of Animal Health, Guangdong Academy of Agricultural Sciences
    South China Agricultural University)

  • Chang Li

    (The First Hospital of Jilin University
    Chinese Academy of Medical Sciences, Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences)

Abstract

The severe fever with thrombocytopenia syndrome virus (SFTSV) is a tick-borne human-infecting bunyavirus, which utilizes two envelope glycoproteins, Gn and Gc, to enter host cells. However, the structure and organization of these glycoproteins on virion surface are not yet known. Here we describe the structure of SFTSV determined by single particle reconstruction, which allows mechanistic insights into bunyavirus assembly at near-atomic resolution. The SFTSV Gn and Gc proteins exist as heterodimers and further assemble into pentameric and hexameric peplomers, shielding the Gc fusion loops by both intra- and inter-heterodimer interactions. Individual peplomers are associated mainly through the ectodomains, in which the highly conserved glycans on N914 of Gc play a crucial role. This elaborate assembly stabilizes Gc in the metastable prefusion conformation and creates some cryptic epitopes that are only accessible in the intermediate states during virus entry. These findings provide an important basis for developing vaccines and therapeutic drugs.

Suggested Citation

  • Shouwen Du & Ruchao Peng & Wang Xu & Xiaoyun Qu & Yuhang Wang & Jiamin Wang & Letian Li & Mingyao Tian & Yudong Guan & Jigang Wang & Guoqing Wang & Hao Li & Lingcong Deng & Xiaoshuang Shi & Yidan Ma &, 2023. "Cryo-EM structure of severe fever with thrombocytopenia syndrome virus," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41804-7
    DOI: 10.1038/s41467-023-41804-7
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-41804-7
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-41804-7?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Steinar Halldorsson & Sai Li & Mengqiu Li & Karl Harlos & Thomas A. Bowden & Juha T. Huiskonen, 2018. "Shielding and activation of a viral membrane fusion protein," Nature Communications, Nature, vol. 9(1), pages 1-9, December.
    2. Ricardo M. Sanchez & Yingyi Zhang & Wenbo Chen & Lea Dietrich & Mikhail Kudryashev, 2020. "Subnanometer-resolution structure determination in situ by hybrid subtomogram averaging - single particle cryo-EM," Nature Communications, Nature, vol. 11(1), pages 1-7, December.
    3. Dongjie Zhu & Xiangxi Wang & Qianglin Fang & James L Etten & Michael G Rossmann & Zihe Rao & Xinzheng Zhang, 2018. "Pushing the resolution limit by correcting the Ewald sphere effect in single-particle Cryo-EM reconstructions," Nature Communications, Nature, vol. 9(1), pages 1-7, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yanan Zhu & Christopher W. Koo & C. Keith Cassidy & Matthew C. Spink & Tao Ni & Laura C. Zanetti-Domingues & Benji Bateman & Marisa L. Martin-Fernandez & Juan Shen & Yuewen Sheng & Yun Song & Zhengyi , 2022. "Structure and activity of particulate methane monooxygenase arrays in methanotrophs," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    2. Kotaro Kelley & Ashleigh M. Raczkowski & Oleg Klykov & Pattana Jaroenlak & Daija Bobe & Mykhailo Kopylov & Edward T. Eng & Gira Bhabha & Clinton S. Potter & Bridget Carragher & Alex J. Noble, 2022. "Waffle Method: A general and flexible approach for improving throughput in FIB-milling," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Nikita Balyschew & Artsemi Yushkevich & Vasilii Mikirtumov & Ricardo M. Sanchez & Thiemo Sprink & Mikhail Kudryashev, 2023. "Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    4. Benjamin Gutjahr & Markus Keller & Melanie Rissmann & Felicitas von Arnim & Susanne Jäckel & Sven Reiche & Reiner Ulrich & Martin H Groschup & Martin Eiden, 2020. "Two monoclonal antibodies against glycoprotein Gn protect mice from Rift Valley Fever challenge by cooperative effects," PLOS Neglected Tropical Diseases, Public Library of Science, vol. 14(3), pages 1-18, March.
    5. Zhennan Zhao & Youhua Huang & Congcong Liu & Dongjie Zhu & Shuaixin Gao & Sheng Liu & Ruchao Peng & Ya Zhang & Xiaohong Huang & Jianxun Qi & Catherine C. L. Wong & Xinzheng Zhang & Peiyi Wang & Qiwei , 2023. "Near-atomic architecture of Singapore grouper iridovirus and implications for giant virus assembly," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    6. Jing Cheng & Tong Liu & Xin You & Fa Zhang & Sen-Fang Sui & Xiaohua Wan & Xinzheng Zhang, 2023. "Determining protein structures in cellular lamella at pseudo-atomic resolution by GisSPA," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    7. Qi Jia & Ye Xiang, 2023. "Cryo-EM structure of a bacteriophage M13 mini variant," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    8. Guosong Wang & Zhenghui Zha & Pengfei Huang & Hui Sun & Yang Huang & Maozhou He & Tian Chen & Lina Lin & Zhenqin Chen & Zhibo Kong & Yuqiong Que & Tingting Li & Ying Gu & Hai Yu & Jun Zhang & Qingbing, 2022. "Structures of pseudorabies virus capsids," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    9. Rong-Cheng Yu & Feng Yang & Hong-Yan Zhang & Pu Hou & Kang Du & Jie Zhu & Ning Cui & Xudong Xu & Yuxing Chen & Qiong Li & Cong-Zhao Zhou, 2024. "Structure of the intact tail machine of Anabaena myophage A-1(L)," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    10. Nathaniel S. Chapman & Ruben J. G. Hulswit & Jonna L. B. Westover & Robert Stass & Guido C. Paesen & Elad Binshtein & Joseph X. Reidy & Taylor B. Engdahl & Laura S. Handal & Alejandra Flores & Brian B, 2023. "Multifunctional human monoclonal antibody combination mediates protection against Rift Valley fever virus at low doses," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    11. Qianqian Shao & Irina V. Agarkova & Eric A. Noel & David D. Dunigan & Yunshu Liu & Aohan Wang & Mingcheng Guo & Linlin Xie & Xinyue Zhao & Michael G. Rossmann & James L. Etten & Thomas Klose & Qiangli, 2022. "Near-atomic, non-icosahedrally averaged structure of giant virus Paramecium bursaria chlorella virus 1," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    12. Samantha Hover & Frank W. Charlton & Jan Hellert & Jessica J. Swanson & Jamel Mankouri & John N. Barr & Juan Fontana, 2023. "Organisation of the orthobunyavirus tripodal spike and the structural changes induced by low pH and K+ during entry," Nature Communications, Nature, vol. 14(1), pages 1-16, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41804-7. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.