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IFNγ-Stat1 axis drives aging-associated loss of intestinal tissue homeostasis and regeneration

Author

Listed:
  • Omid Omrani

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Anna Krepelova

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI)
    University of Turin
    University of Turin)

  • Seyed Mohammad Mahdi Rasa

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Dovydas Sirvinskas

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Jing Lu

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Francesco Annunziata

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • George Garside

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Seerat Bajwa

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Susanne Reinhardt

    (Dresden-concept Genome Center, c/o Center for Regenerative Therapies Dresden (CRTD))

  • Lisa Adam

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Sandra Käppel

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Nadia Ducano

    (University of Turin
    University of Turin)

  • Daniela Donna

    (University of Turin
    University of Turin)

  • Alessandro Ori

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Salvatore Oliviero

    (University of Turin
    University of Turin)

  • Karl Lenhard Rudolph

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI))

  • Francesco Neri

    (Leibniz Institute on Aging – Fritz Lipmann Institute (FLI)
    University of Turin
    University of Turin)

Abstract

The influence of aging on intestinal stem cells and their niche can explain underlying causes for perturbation in their function observed during aging. Molecular mechanisms for such a decrease in the functionality of intestinal stem cells during aging remain largely undetermined. Using transcriptome-wide approaches, our study demonstrates that aging intestinal stem cells strongly upregulate antigen presenting pathway genes and over-express secretory lineage marker genes resulting in lineage skewed differentiation into the secretory lineage and strong upregulation of MHC class II antigens in the aged intestinal epithelium. Mechanistically, we identified an increase in proinflammatory cells in the lamina propria as the main source of elevated interferon gamma (IFNγ) in the aged intestine, that leads to the induction of Stat1 activity in intestinal stem cells thus priming the aberrant differentiation and elevated antigen presentation in epithelial cells. Of note, systemic inhibition of IFNγ-signaling completely reverses these aging phenotypes and reinstalls regenerative capacity of the aged intestinal epithelium.

Suggested Citation

  • Omid Omrani & Anna Krepelova & Seyed Mohammad Mahdi Rasa & Dovydas Sirvinskas & Jing Lu & Francesco Annunziata & George Garside & Seerat Bajwa & Susanne Reinhardt & Lisa Adam & Sandra Käppel & Nadia D, 2023. "IFNγ-Stat1 axis drives aging-associated loss of intestinal tissue homeostasis and regeneration," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41683-y
    DOI: 10.1038/s41467-023-41683-y
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    as
    1. Kai Mao & Gabriela Farias Quipildor & Tahmineh Tabrizian & Ardijana Novaj & Fangxia Guan & Ryan O. Walters & Fabien Delahaye & Gene B. Hubbard & Yuji Ikeno & Keisuke Ejima & Peng Li & David B. Allison, 2018. "Late-life targeting of the IGF-1 receptor improves healthspan and lifespan in female mice," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
    2. Adam L. Haber & Moshe Biton & Noga Rogel & Rebecca H. Herbst & Karthik Shekhar & Christopher Smillie & Grace Burgin & Toni M. Delorey & Michael R. Howitt & Yarden Katz & Itay Tirosh & Semir Beyaz & Da, 2017. "A single-cell survey of the small intestinal epithelium," Nature, Nature, vol. 551(7680), pages 333-339, November.
    3. Tae-Hee Kim & Fugen Li & Isabel Ferreiro-Neira & Li-Lun Ho & Annouck Luyten & Kodandaramireddy Nalapareddy & Henry Long & Michael Verzi & Ramesh A. Shivdasani, 2014. "Broadly permissive intestinal chromatin underlies lateral inhibition and cell plasticity," Nature, Nature, vol. 506(7489), pages 511-515, February.
    4. Nalle Pentinmikko & Sharif Iqbal & Miyeko Mana & Simon Andersson & Armand B. Cognetta & Radu M. Suciu & Jatin Roper & Kalle Luopajärvi & Eino Markelin & Swetha Gopalakrishnan & Olli-Pekka Smolander & , 2019. "Notum produced by Paneth cells attenuates regeneration of aged intestinal epithelium," Nature, Nature, vol. 571(7765), pages 398-402, July.
    5. Toshiro Sato & Robert G. Vries & Hugo J. Snippert & Marc van de Wetering & Nick Barker & Daniel E. Stange & Johan H. van Es & Arie Abo & Pekka Kujala & Peter J. Peters & Hans Clevers, 2009. "Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche," Nature, Nature, vol. 459(7244), pages 262-265, May.
    6. Jakob von Moltke & Ming Ji & Hong-Erh Liang & Richard M. Locksley, 2016. "Tuft-cell-derived IL-25 regulates an intestinal ILC2–epithelial response circuit," Nature, Nature, vol. 529(7585), pages 221-225, January.
    7. Ysbrand M. Nusse & Adam K. Savage & Pauline Marangoni & Axel K. M. Rosendahl-Huber & Tyler A. Landman & Frederic J. Sauvage & Richard M. Locksley & Ophir D. Klein, 2018. "Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche," Nature, Nature, vol. 559(7712), pages 109-113, July.
    8. Bruno Hudry & Sanjay Khadayate & Irene Miguel-Aliaga, 2016. "The sexual identity of adult intestinal stem cells controls organ size and plasticity," Nature, Nature, vol. 530(7590), pages 344-348, February.
    9. Rasmus Freter & Paola Falletta & Omid Omrani & Mahdi Rasa & Katharine Herbert & Francesco Annunziata & Alberto Minetti & Anna Krepelova & Lisa Adam & Sandra Käppel & Tina Rüdiger & Zhao-Qi Wang & Coli, 2021. "Establishment of a fluorescent reporter of RNA-polymerase II activity to identify dormant cells," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    10. Ben W. Dulken & Matthew T. Buckley & Paloma Navarro Negredo & Naresha Saligrama & Romain Cayrol & Dena S. Leeman & Benson M. George & Stéphane C. Boutet & Katja Hebestreit & John V. Pluvinage & Tony W, 2019. "Single-cell analysis reveals T cell infiltration in old neurogenic niches," Nature, Nature, vol. 571(7764), pages 205-210, July.
    11. Simon C. Johnson & Peter S. Rabinovitch & Matt Kaeberlein, 2013. "mTOR is a key modulator of ageing and age-related disease," Nature, Nature, vol. 493(7432), pages 338-345, January.
    12. Dan He & Hongguang Wu & Jinnan Xiang & Xinsen Ruan & Peike Peng & Yuanyuan Ruan & Ye-Guang Chen & Yibin Wang & Qiang Yu & Hongbing Zhang & Samy L. Habib & Ronald A. Pinho & Huijuan Liu & Baojie Li, 2020. "Gut stem cell aging is driven by mTORC1 via a p38 MAPK-p53 pathway," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
    13. Rumana Bahar & Claudia H. Hartmann & Karl A. Rodriguez & Ashley D. Denny & Rita A. Busuttil & Martijn E. T. Dollé & R. Brent Calder & Gary B. Chisholm & Brad H. Pollock & Christoph A. Klein & Jan Vijg, 2006. "Increased cell-to-cell variation in gene expression in ageing mouse heart," Nature, Nature, vol. 441(7096), pages 1011-1014, June.
    14. Francesco Neri & Stefania Rapelli & Anna Krepelova & Danny Incarnato & Caterina Parlato & Giulia Basile & Mara Maldotti & Francesca Anselmi & Salvatore Oliviero, 2017. "Intragenic DNA methylation prevents spurious transcription initiation," Nature, Nature, vol. 543(7643), pages 72-77, March.
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