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mcPGK1-dependent mitochondrial import of PGK1 promotes metabolic reprogramming and self-renewal of liver TICs

Author

Listed:
  • Zhenzhen Chen

    (Zhengzhou University)

  • Qiankun He

    (Zhengzhou University)

  • Tiankun Lu

    (Zhengzhou University)

  • Jiayi Wu

    (Nankai University)

  • Gaoli Shi

    (Zhengzhou University)

  • Luyun He

    (Zhengzhou University)

  • Hong Zong

    (The First Affiliated Hospital of Zhengzhou University)

  • Benyu Liu

    (Zhengzhou University)

  • Pingping Zhu

    (Zhengzhou University)

Abstract

Liver tumour-initiating cells (TICs) contribute to tumour initiation, metastasis, progression and drug resistance. Metabolic reprogramming is a cancer hallmark and plays vital roles in liver tumorigenesis. However, the role of metabolic reprogramming in TICs remains poorly explored. Here, we identify a mitochondria-encoded circular RNA, termed mcPGK1 (mitochondrial circRNA for translocating phosphoglycerate kinase 1), which is highly expressed in liver TICs. mcPGK1 knockdown impairs liver TIC self-renewal, whereas its overexpression drives liver TIC self-renewal. Mechanistically, mcPGK1 regulates metabolic reprogramming by inhibiting mitochondrial oxidative phosphorylation (OXPHOS) and promoting glycolysis. This alters the intracellular levels of α-ketoglutarate and lactate, which are modulators in Wnt/β-catenin activation and liver TIC self-renewal. In addition, mcPGK1 promotes PGK1 mitochondrial import via TOM40 interactions, reprogramming metabolism from oxidative phosphorylation to glycolysis through PGK1-PDK1-PDH axis. Our work suggests that mitochondria-encoded circRNAs represent an additional regulatory layer controlling mitochondrial function, metabolic reprogramming and liver TIC self-renewal.

Suggested Citation

  • Zhenzhen Chen & Qiankun He & Tiankun Lu & Jiayi Wu & Gaoli Shi & Luyun He & Hong Zong & Benyu Liu & Pingping Zhu, 2023. "mcPGK1-dependent mitochondrial import of PGK1 promotes metabolic reprogramming and self-renewal of liver TICs," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36651-5
    DOI: 10.1038/s41467-023-36651-5
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    as
    1. Sebastian Memczak & Marvin Jens & Antigoni Elefsinioti & Francesca Torti & Janna Krueger & Agnieszka Rybak & Luisa Maier & Sebastian D. Mackowiak & Lea H. Gregersen & Mathias Munschauer & Alexander Lo, 2013. "Circular RNAs are a large class of animal RNAs with regulatory potency," Nature, Nature, vol. 495(7441), pages 333-338, March.
    2. Hao Nie & Haixing Ju & Jiayi Fan & Xiaoliu Shi & Yaxian Cheng & Xiaohui Cang & Zhiguo Zheng & Xiaotao Duan & Wen Yi, 2020. "O-GlcNAcylation of PGK1 coordinates glycolysis and TCA cycle to promote tumor growth," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    3. Thomas B. Hansen & Trine I. Jensen & Bettina H. Clausen & Jesper B. Bramsen & Bente Finsen & Christian K. Damgaard & Jørgen Kjems, 2013. "Natural RNA circles function as efficient microRNA sponges," Nature, Nature, vol. 495(7441), pages 384-388, March.
    4. Di Zhang & Zhanyun Tang & He Huang & Guolin Zhou & Chang Cui & Yejing Weng & Wenchao Liu & Sunjoo Kim & Sangkyu Lee & Mathew Perez-Neut & Jun Ding & Daniel Czyz & Rong Hu & Zhen Ye & Maomao He & Y. Ge, 2019. "Metabolic regulation of gene expression by histone lactylation," Nature, Nature, vol. 574(7779), pages 575-580, October.
    5. Bojan Losic & Amanda J. Craig & Carlos Villacorta-Martin & Sebastiao N. Martins-Filho & Nicholas Akers & Xintong Chen & Mehmet E. Ahsen & Johann Felden & Ismail Labgaa & Delia DʹAvola & Kimaada Allett, 2020. "Intratumoral heterogeneity and clonal evolution in liver cancer," Nature Communications, Nature, vol. 11(1), pages 1-15, December.
    6. Zhen-zhen Chen & Lan Huang & Ya-hong Wu & Wen-jie Zhai & Ping-ping Zhu & Yan-feng Gao, 2016. "LncSox4 promotes the self-renewal of liver tumour-initiating cells through Stat3-mediated Sox4 expression," Nature Communications, Nature, vol. 7(1), pages 1-13, November.
    7. Pingping Zhu & Yanying Wang & Ying Du & Lei He & Guanling Huang & Geng Zhang & Xinlong Yan & Zusen Fan, 2015. "C8orf4 negatively regulates self-renewal of liver cancer stem cells via suppression of NOTCH2 signalling," Nature Communications, Nature, vol. 6(1), pages 1-13, November.
    8. Kerstin Hill & Kirstin Model & Michael T. Ryan & Klaus Dietmeier & Falk Martin & Richard Wagner & Nikolaus Pfanner, 1998. "Tom40 forms the hydrophilic channel of the mitochondrial import pore for preproteins," Nature, Nature, vol. 395(6701), pages 516-521, October.
    9. Beverly Y. Mok & Marcos H. de Moraes & Jun Zeng & Dustin E. Bosch & Anna V. Kotrys & Aditya Raguram & FoSheng Hsu & Matthew C. Radey & S. Brook Peterson & Vamsi K. Mootha & Joseph D. Mougous & David R, 2020. "A bacterial cytidine deaminase toxin enables CRISPR-free mitochondrial base editing," Nature, Nature, vol. 583(7817), pages 631-637, July.
    10. Pingping Zhu & Yanying Wang & Jiayi Wu & Guanling Huang & Benyu Liu & Buqing Ye & Ying Du & Guangxia Gao & Yong Tian & Lei He & Zusen Fan, 2016. "LncBRM initiates YAP1 signalling activation to drive self-renewal of liver cancer stem cells," Nature Communications, Nature, vol. 7(1), pages 1-13, December.
    11. Benyu Liu & Buqing Ye & Xiaoxiao Zhu & Liuliu Yang & Huimu Li & Nian Liu & Pingping Zhu & Tiankun Lu & Luyun He & Yong Tian & Zusen Fan, 2020. "An inducible circular RNA circKcnt2 inhibits ILC3 activation to facilitate colitis resolution," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
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