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Wnt/β-catenin signalling is required for pole-specific chromatin remodeling during planarian regeneration

Author

Listed:
  • Eudald Pascual-Carreras

    (Universitat de Barcelona (UB) & Institute of Biomedicine of Universitat de Barcelona (IBUB))

  • Marta Marín-Barba

    (University of East Anglia, Norwich Research Park)

  • Sergio Castillo-Lara

    (Universitat de Barcelona (UB) & Institute of Biomedicine of Universitat de Barcelona (IBUB))

  • Pablo Coronel-Córdoba

    (Universitat de Barcelona (UB) & Institute of Biomedicine of Universitat de Barcelona (IBUB))

  • Marta Silvia Magri

    (Universidad Pablo de Olavide)

  • Grant N. Wheeler

    (University of East Anglia, Norwich Research Park)

  • Jose Luis Gómez-Skarmeta

    (Universidad Pablo de Olavide)

  • Josep F. Abril

    (Universitat de Barcelona (UB) & Institute of Biomedicine of Universitat de Barcelona (IBUB))

  • Emili Saló

    (Universitat de Barcelona (UB) & Institute of Biomedicine of Universitat de Barcelona (IBUB))

  • Teresa Adell

    (Universitat de Barcelona (UB) & Institute of Biomedicine of Universitat de Barcelona (IBUB))

Abstract

For successful regeneration, the identity of the missing tissue must be specified according to the pre-existing tissue. Planarians are ideal for the study of the mechanisms underlying this process; the same field of cells can regrow a head or a tail according to the missing body part. After amputation, the differential activation of the Wnt/β-catenin signal specifies anterior versus posterior identity. Initially, both wnt1 and notum (Wnt inhibitor) are expressed in all wounds, but 48 hours later they are restricted to posterior or anterior facing wounds, respectively, by an unknown mechanism. Here we show that 12 hours after amputation, the chromatin accessibility of cells in the wound region changes according to the polarity of the pre-existing tissue in a Wnt/β-catenin-dependent manner. Genomic analyses suggest that homeobox transcription factors and chromatin-remodeling proteins are direct Wnt/β-catenin targets, which trigger the expression of posterior effectors. Finally, we identify FoxG as a wnt1 up-stream regulator, probably via binding to its first intron enhancer region.

Suggested Citation

  • Eudald Pascual-Carreras & Marta Marín-Barba & Sergio Castillo-Lara & Pablo Coronel-Córdoba & Marta Silvia Magri & Grant N. Wheeler & Jose Luis Gómez-Skarmeta & Josep F. Abril & Emili Saló & Teresa Ade, 2023. "Wnt/β-catenin signalling is required for pole-specific chromatin remodeling during planarian regeneration," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-35937-y
    DOI: 10.1038/s41467-023-35937-y
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    References listed on IDEAS

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    1. Lauren E. Cote & Eric Simental & Peter W. Reddien, 2019. "Muscle functions as a connective tissue and source of extracellular matrix in planarians," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    2. Matthias C. Vogg & Leonardo Beccari & Laura Iglesias Ollé & Christine Rampon & Sophie Vriz & Chrystelle Perruchoud & Yvan Wenger & Brigitte Galliot, 2019. "An evolutionarily-conserved Wnt3/β-catenin/Sp5 feedback loop restricts head organizer activity in Hydra," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
    3. Claire Anderson & Mohsin A. F. Khan & Frances Wong & Tatiana Solovieva & Nidia M. M. Oliveira & Richard A. Baldock & Cheryll Tickle & Dave W. Burt & Claudio D. Stern, 2016. "A strategy to discover new organizers identifies a putative heart organizer," Nature Communications, Nature, vol. 7(1), pages 1-9, November.
    4. Caryn S. Ross-Innes & Rory Stark & Andrew E. Teschendorff & Kelly A. Holmes & H. Raza Ali & Mark J. Dunning & Gordon D. Brown & Ondrej Gojis & Ian O. Ellis & Andrew R. Green & Simak Ali & Suet-Feung C, 2012. "Differential oestrogen receptor binding is associated with clinical outcome in breast cancer," Nature, Nature, vol. 481(7381), pages 389-393, January.
    5. Christopher P. Arnold & Analí Migueles Lozano & Frederick G. Mann & Stephanie H. Nowotarski & Julianna O. Haug & Jeffrey J. Lange & Chris W. Seidel & Alejandro Sánchez Alvarado, 2021. "Hox genes regulate asexual reproductive behavior and tissue segmentation in adult animals," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    6. M. Lucila Scimone & Lauren E. Cote & Peter W. Reddien, 2017. "Orthogonal muscle fibres have different instructive roles in planarian regeneration," Nature, Nature, vol. 551(7682), pages 623-628, November.
    7. Markus Alexander Grohme & Siegfried Schloissnig & Andrei Rozanski & Martin Pippel & George Robert Young & Sylke Winkler & Holger Brandl & Ian Henry & Andreas Dahl & Sean Powell & Michael Hiller & Euge, 2018. "The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms," Nature, Nature, vol. 554(7690), pages 56-61, February.
    8. Junsu Kang & Jianxin Hu & Ravi Karra & Amy L. Dickson & Valerie A. Tornini & Gregory Nachtrab & Matthew Gemberling & Joseph A. Goldman & Brian L. Black & Kenneth D. Poss, 2016. "Modulation of tissue repair by regeneration enhancer elements," Nature, Nature, vol. 532(7598), pages 201-206, April.
    9. M. Lucila Scimone & Jennifer K. Cloutier & Chloe L. Maybrun & Peter W. Reddien, 2022. "The planarian wound epidermis gene equinox is required for blastema formation in regeneration," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
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