IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v342y2016icp123-134.html
   My bibliography  Save this article

Risk of invasion predicted with support vector machines: A case study on northern pike (Esox Lucius, L.) and bleak (Alburnus alburnus, L.)

Author

Listed:
  • Muñoz-Mas, Rafael
  • Vezza, Paolo
  • Alcaraz-Hernández, Juan Diego
  • Martínez-Capel, Francisco

Abstract

The impacts of invasive species are recognised as a major threat to global freshwater biodiversity. The risk of invasion (probability of presence) of two avowed invasive species, the northern pike (Esox Lucius, L.) and bleak (Alburnus alburnus, L.), was evaluated in the upper part of the Cabriel River (eastern Iberian Peninsula). Habitat suitability models for these invasive species were developed with Support Vector Machines (SVMs), which were trained with data collected downstream the Contreras dam (the last barrier impeding the invasion of the upper river segment). Although SVMs gained visibility in habitat suitability modelling, they cannot be considered widespread in ecology. Thus, with this technique, there is certain controversy about the necessity of performing variable selection procedures. In this study, the parameters tuning and the variable selection for the SVMs was simultaneously performed with a genetic algorithm and, contradicting previous studies in freshwater ecology, the variable selection proved necessary to achieve almost perfect accuracy. Further, the development of partial dependence plots allowed unveiling the relationship between the selected input variables and the probability of presence. Results revealed the preference of northern pike for large and wide mesohabitats with vegetated shores and abundant prey whereas bleak preferred deep and slightly fast flow mesohabitats with fine substrate. Both species proved able to colonize the upper part of the Cabriel River but the habitat suitability for bleak indicated a slightly higher risk of invasion. Altogether may threaten the endemic species that actually inhabit that stretch, especially the Júcar nase (Parachondrostoma arrigonis; Steindachner), which is one of the most critically endangered Iberian freshwater fish species.

Suggested Citation

  • Muñoz-Mas, Rafael & Vezza, Paolo & Alcaraz-Hernández, Juan Diego & Martínez-Capel, Francisco, 2016. "Risk of invasion predicted with support vector machines: A case study on northern pike (Esox Lucius, L.) and bleak (Alburnus alburnus, L.)," Ecological Modelling, Elsevier, vol. 342(C), pages 123-134.
  • Handle: RePEc:eee:ecomod:v:342:y:2016:i:c:p:123-134
    DOI: 10.1016/j.ecolmodel.2016.10.006
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380016305397
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2016.10.006?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Baetens, J.M. & Van Nieuland, S. & Pauwels, I.S. & De Baets, B. & Mouton, A.M. & Goethals, P.L.M., 2013. "An individual-based model for the migration of pike (Esox lucius) in the river Yser, Belgium," Ecological Modelling, Elsevier, vol. 258(C), pages 40-52.
    2. Milica Stojković & Djuradj Milošević & Snežana Simić & Vladica Simić, 2014. "Using a Fish-Based Model to Assess the Ecological Status of Lotic Systems in Serbia," Water Resources Management: An International Journal, Published for the European Water Resources Association (EWRA), Springer;European Water Resources Association (EWRA), vol. 28(13), pages 4615-4629, October.
    3. Mebane Jr., Walter R. & Sekhon, Jasjeet S., 2011. "Genetic Optimization Using Derivatives: The rgenoud Package for R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 42(i11).
    4. Muñoz-Mas, R. & Martínez-Capel, F. & Alcaraz-Hernández, J.D. & Mouton, A.M., 2015. "Can multilayer perceptron ensembles model the ecological niche of freshwater fish species?," Ecological Modelling, Elsevier, vol. 309, pages 72-81.
    5. J. Kruskal, 1964. "Nonmetric multidimensional scaling: A numerical method," Psychometrika, Springer;The Psychometric Society, vol. 29(2), pages 115-129, June.
    6. J. Kruskal, 1964. "Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis," Psychometrika, Springer;The Psychometric Society, vol. 29(1), pages 1-27, March.
    7. Austin, Mike, 2007. "Species distribution models and ecological theory: A critical assessment and some possible new approaches," Ecological Modelling, Elsevier, vol. 200(1), pages 1-19.
    8. Sadeghi, Roghayeh & Zarkami, Rahmat & Van Damme, Patrick, 2014. "Modelling habitat preference of an alien aquatic fern, Azolla filiculoides (Lam.), in Anzali wetland (Iran) using data-driven methods," Ecological Modelling, Elsevier, vol. 284(C), pages 1-9.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Muñoz-Mas, Rafael & Marcos-Garcia, Patricia & Lopez-Nicolas, Antonio & Martínez-García, Francisco J. & Pulido-Velazquez, Manuel & Martínez-Capel, Francisco, 2018. "Combining literature-based and data-driven fuzzy models to predict brown trout (Salmo trutta L.) spawning habitat degradation induced by climate change," Ecological Modelling, Elsevier, vol. 386(C), pages 98-114.
    2. Gobeyn, Sacha & Mouton, Ans M. & Cord, Anna F. & Kaim, Andrea & Volk, Martin & Goethals, Peter L.M., 2019. "Evolutionary algorithms for species distribution modelling: A review in the context of machine learning," Ecological Modelling, Elsevier, vol. 392(C), pages 179-195.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Simensen, Trond & Halvorsen, Rune & Erikstad, Lars, 2018. "Methods for landscape characterisation and mapping: A systematic review," Land Use Policy, Elsevier, vol. 75(C), pages 557-569.
    2. Willem Heiser, 1991. "A generalized majorization method for least souares multidimensional scaling of pseudodistances that may be negative," Psychometrika, Springer;The Psychometric Society, vol. 56(1), pages 7-27, March.
    3. Luís Francisco Aguiar & Pedro C. Magalhães & Maria Joana Soares, 2010. "Synchronism in Electoral Cycles: How United are the United States?," NIPE Working Papers 17/2010, NIPE - Universidade do Minho.
    4. Kennen, Jonathan G. & Kauffman, Leon J. & Ayers, Mark A. & Wolock, David M. & Colarullo, Susan J., 2008. "Use of an integrated flow model to estimate ecologically relevant hydrologic characteristics at stream biomonitoring sites," Ecological Modelling, Elsevier, vol. 211(1), pages 57-76.
    5. Keith Poole, 1990. "Least squares metric, unidimensional scaling of multivariate linear models," Psychometrika, Springer;The Psychometric Society, vol. 55(1), pages 123-149, March.
    6. Berrie Zielman & Willem Heiser, 1993. "Analysis of asymmetry by a slide-vector," Psychometrika, Springer;The Psychometric Society, vol. 58(1), pages 101-114, March.
    7. Hansohm, Jürgen, 2007. "Algorithms and error estimations for monotone regression on partially preordered sets," Journal of Multivariate Analysis, Elsevier, vol. 98(5), pages 1043-1050, May.
    8. Christian Genest & Johanna G. Nešlehová, 2014. "A Conversation with James O. Ramsay," International Statistical Review, International Statistical Institute, vol. 82(2), pages 161-183, August.
    9. Jerzy Grobelny & Rafal Michalski & Gerhard-Wilhelm Weber, 2021. "Modeling human thinking about similarities by neuromatrices in the perspective of fuzzy logic," WORking papers in Management Science (WORMS) WORMS/21/09, Department of Operations Research and Business Intelligence, Wroclaw University of Science and Technology.
    10. Monteiro, Carlos M.F. & Dibb, Sally & Almeida, Luis Tadeu, 2010. "Revealing doctors' prescribing choice dimensions with multivariate tools: A perceptual mapping approach," European Journal of Operational Research, Elsevier, vol. 201(3), pages 909-920, March.
    11. Peter Verboon & Ivo Lans, 1994. "Robust canonical discriminant analysis," Psychometrika, Springer;The Psychometric Society, vol. 59(4), pages 485-507, December.
    12. Patrick Groenen & Bart-Jan Os & Jacqueline Meulman, 2000. "Optimal scaling by alternating length-constrained nonnegative least squares, with application to distance-based analysis," Psychometrika, Springer;The Psychometric Society, vol. 65(4), pages 511-524, December.
    13. Guerdjikova, Ani, 2008. "Case-based learning with different similarity functions," Games and Economic Behavior, Elsevier, vol. 63(1), pages 107-132, May.
    14. Giovanni De Luca & Paola Zuccolotto, 2011. "A tail dependence-based dissimilarity measure for financial time series clustering," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 5(4), pages 323-340, December.
    15. Hossein Safizadeh, M. & McKenna, David R., 1996. "Application of multidimensional scaling techniques to facilities layout," European Journal of Operational Research, Elsevier, vol. 92(1), pages 54-62, July.
    16. Guerdjikova, Ani, 2006. "Portfolio Choice and Asset Prices in an Economy Populated by Case-Based Decision Makers," Working Papers 06-13, Cornell University, Center for Analytic Economics.
    17. Phipps Arabie, 1991. "Was euclid an unnecessarily sophisticated psychologist?," Psychometrika, Springer;The Psychometric Society, vol. 56(4), pages 567-587, December.
    18. Verniest, Fabien & Greulich, Sabine, 2019. "Methods for assessing the effects of environmental parameters on biological communities in long-term ecological studies - A literature review," Ecological Modelling, Elsevier, vol. 414(C).
    19. Raymond, Ben & Hosie, Graham, 2009. "Network-based exploration and visualisation of ecological data," Ecological Modelling, Elsevier, vol. 220(5), pages 673-683.
    20. Luís Aguiar-Conraria & Pedro Magalhães & Maria Soares, 2013. "The nationalization of electoral cycles in the United States: a wavelet analysis," Public Choice, Springer, vol. 156(3), pages 387-408, September.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:342:y:2016:i:c:p:123-134. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.