IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v302y2015icp42-53.html
   My bibliography  Save this article

Global overview of the applications of the Ecopath with Ecosim modeling approach using the EcoBase models repository

Author

Listed:
  • Colléter, Mathieu
  • Valls, Audrey
  • Guitton, Jérôme
  • Gascuel, Didier
  • Pauly, Daniel
  • Christensen, Villy

Abstract

The ‘Ecopath’, later expanded to ‘Ecopath with Ecosim’ (‘EwE’), modeling approach has been applied to hundreds of ecosystems around the world, since its first implementation in 1984. The ‘EcoBase’ model repository was developed to gather EwE models published worldwide. For the 433 unique models documented in EcoBase, we compiled, standardized, and analyzed all available metadata describing critical aspects of the models. We proposed a general description of the EwE applications and we analyzed their evolution over the last 30 years, based on the year of publication of the models. Then, we performed a correspondence analysis on the metadata to identify the main types of EwE models. Overall, most models were built to analyze ecosystem functioning and fisheries, principally in the Northern and Central Atlantic Ocean. During the first decade (1984–1993), most EwE applications were Ecopath models representing tropical marine systems and using simple food web representations to analyze trophic functioning only. Over the last two decades (1994–2014), EwE models were applied to study a wider variety of ecosystems, including polar regions and terrestrial systems, and a wider range of research topics , including pollution, aquaculture and Marine Protected Areas. The modeling practices also evolved toward Ecopath (but also Ecosim and Ecospace) models with larger spatial scales, shorter temporal scales, and more complex representations of the food web. In parallel, the numbers of both publications and modelers have steadily increased, while the proportion of journal articles presenting EwE-based studies has been growing. The correspondence analysis confirmed these trends and discriminated three types of models: the basic Ecopath models developed during the first decade, the average models developed over the last two decades using Ecopath and Ecosim routines and an intermediate number of groups, and the most elaborated models including Ecospace simulations and a high number of groups with multi-stanza. We concluded by discussing the challenges and potentials of the compilation and meta-analysis of EwE models, notably by using the EcoBase repository. This global overview showed that the usage of and interest for the EwE modeling approach in the scientific community had evolved and expended over the last three decades to support ecosystem-based fishery management.

Suggested Citation

  • Colléter, Mathieu & Valls, Audrey & Guitton, Jérôme & Gascuel, Didier & Pauly, Daniel & Christensen, Villy, 2015. "Global overview of the applications of the Ecopath with Ecosim modeling approach using the EcoBase models repository," Ecological Modelling, Elsevier, vol. 302(C), pages 42-53.
  • Handle: RePEc:eee:ecomod:v:302:y:2015:i:c:p:42-53
    DOI: 10.1016/j.ecolmodel.2015.01.025
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380015000447
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2015.01.025?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Christensen, Villy & Walters, Carl J. & Ahrens, Robert & Alder, Jacqueline & Buszowski, Joe & Christensen, Line Bang & Cheung, William W.L. & Dunne, John & Froese, Rainer & Karpouzi, Vasiliki & Kaschn, 2009. "Database-driven models of the world's Large Marine Ecosystems," Ecological Modelling, Elsevier, vol. 220(17), pages 1984-1996.
    2. Christensen, V. & Pauly, D. (eds.), 1993. "Trophic models of aquatic ecosystems," Monographs, The WorldFish Center, number 8432, April.
    3. Christensen, V. & Garces, L.R & Silvestre, G. & Pauly, D., 2003. "Fisheries impact on the South China Sea large marine ecosystem: a preliminary analysis using spatially-explicit methodology," Monographs, The WorldFish Center, number 36432, April.
    4. Pauly, D., 1988. "On using other people's data," Naga, The WorldFish Center, vol. 11(1), pages 6-7.
    5. Walters, Carl & Christensen, Villy, 2007. "Adding realism to foraging arena predictions of trophic flow rates in Ecosim ecosystem models: Shared foraging arenas and bout feeding," Ecological Modelling, Elsevier, vol. 209(2), pages 342-350.
    6. Heather A Piwowar & Roger S Day & Douglas B Fridsma, 2007. "Sharing Detailed Research Data Is Associated with Increased Citation Rate," PLOS ONE, Public Library of Science, vol. 2(3), pages 1-5, March.
    7. Gascuel, Didier & Pauly, Daniel, 2009. "EcoTroph: Modelling marine ecosystem functioning and impact of fishing," Ecological Modelling, Elsevier, vol. 220(21), pages 2885-2898.
    8. Gascuel, Didier & Morissette, Lyne & Palomares, Maria Lourdes D. & Christensen, Villy, 2008. "Trophic flow kinetics in marine ecosystems: Toward a theoretical approach to ecosystem functioning," Ecological Modelling, Elsevier, vol. 217(1), pages 33-47.
    9. Lassalle, Géraldine & Bourdaud, Pierre & Saint-Béat, Blanche & Rochette, Sébastien & Niquil, Nathalie, 2014. "A toolbox to evaluate data reliability for whole-ecosystem models: Application on the Bay of Biscay continental shelf food-web model," Ecological Modelling, Elsevier, vol. 285(C), pages 13-21.
    10. Dray, Stéphane & Dufour, Anne-Béatrice, 2007. "The ade4 Package: Implementing the Duality Diagram for Ecologists," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 22(i04).
    11. Zeller, Dirk & Froese, Rainer & Pauly, Daniel, 2005. "On losing and recovering fisheries and marine science data," Marine Policy, Elsevier, vol. 29(1), pages 69-73, January.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Ricci, P. & Sion, L. & Capezzuto, F. & Cipriano, G. & D'Onghia, G. & Libralato, S. & Maiorano, P. & Tursi, A. & Carlucci, R., 2021. "Modelling the trophic roles of the demersal Chondrichthyes in the Northern Ionian Sea (Central Mediterranean Sea)," Ecological Modelling, Elsevier, vol. 444(C).
    2. Tesfaye, Gashaw & Wolff, Matthias, 2018. "Modeling trophic interactions and the impact of an introduced exotic carp species in the Rift Valley Lake Koka, Ethiopia," Ecological Modelling, Elsevier, vol. 378(C), pages 26-36.
    3. Whitehouse, George A. & Aydin, Kerim Y., 2020. "Assessing the sensitivity of three Alaska marine food webs to perturbations: an example of Ecosim simulations using Rpath," Ecological Modelling, Elsevier, vol. 429(C).
    4. Link, Jason S. & Pranovi, Fabio & Libralato, Simone, 2022. "Simulations and interpretations of cumulative trophic theory," Ecological Modelling, Elsevier, vol. 463(C).
    5. Haller-Bull, Vanessa & Rovenskaya, Elena, 2019. "Optimizing functional groups in ecosystem models: Case study of the Great Barrier Reef," Ecological Modelling, Elsevier, vol. 411(C).
    6. Alexandra I. Klimenko & Diana A. Vorobeva & Sergey A. Lashin, 2023. "A New Visualization and Analysis Method for a Convolved Representation of Mass Computational Experiments with Biological Models," Mathematics, MDPI, vol. 11(12), pages 1-19, June.
    7. Grüss, Arnaud & Palomares, Maria L.D. & Poelen, Jorrit H. & Barile, Josephine R. & Aldemita, Casey D. & Ortiz, Shelumiel R. & Barrier, Nicolas & Shin, Yunne-Jai & Simons, James & Pauly, Daniel, 2019. "Building bridges between global information systems on marine organisms and ecosystem models," Ecological Modelling, Elsevier, vol. 398(C), pages 1-19.
    8. Püts, Miriam & Taylor, Marc & Núñez-Riboni, Ismael & Steenbeek, Jeroen & Stäbler, Moritz & Möllmann, Christian & Kempf, Alexander, 2020. "Insights on integrating habitat preferences in process-oriented ecological models – a case study of the southern North Sea," Ecological Modelling, Elsevier, vol. 431(C).
    9. Agudelo, César Augusto Ruiz & Bustos, Sandra Liliana Hurtado & Moreno, Carmen Alicia Parrado, 2020. "Modeling interactions among multiple ecosystem services. A critical review," Ecological Modelling, Elsevier, vol. 429(C).
    10. Heinichen, Margaret & McManus, M. Conor & Lucey, Sean M. & Aydin, Kerim & Humphries, Austin & Innes-Gold, Anne & Collie, Jeremy, 2022. "Incorporating temperature-dependent fish bioenergetics into a Narragansett Bay food web model," Ecological Modelling, Elsevier, vol. 466(C).
    11. McGill, Lillian M. & Gerig, Brandon S. & Chaloner, Dominic T. & Lamberti, Gary A., 2017. "An ecosystem model for evaluating the effects of introduced Pacific salmon on contaminant burdens of stream-resident fish," Ecological Modelling, Elsevier, vol. 355(C), pages 39-48.
    12. Wang, Sai & Wang, Lin & Chang, Hao-Yen & Li, Feng & Tang, Jin-Peng & Zhou, Xing-An & Li, Xing & Tian, Shi-Mi & Lin, Hsing-Juh & Yang, Yang, 2018. "Longitudinal variation in energy flow networks along a large subtropical river, China," Ecological Modelling, Elsevier, vol. 387(C), pages 83-95.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Han, Jeong-Ho & Kumar, Hema K. & Lee, Jae Hoon & Zhang, Chang-Ik & Kim, Se-Wha & Lee, Jung-Ho & Kim, Sang Don & An, Kwang-Guk, 2011. "Integrative trophic network assessments of a lentic ecosystem by key ecological approaches of water chemistry, trophic guilds, and ecosystem health assessments along with an ECOPATH model," Ecological Modelling, Elsevier, vol. 222(19), pages 3457-3472.
    2. Angelini, Ronaldo & de Morais, Ronny José & Catella, Agostinho Carlos & Resende, Emiko Kawakami & Libralato, Simone, 2013. "Aquatic food webs of the oxbow lakes in the Pantanal: A new site for fisheries guaranteed by alternated control?," Ecological Modelling, Elsevier, vol. 253(C), pages 82-96.
    3. Heymans, Johanna Jacomina & Coll, Marta & Link, Jason S. & Mackinson, Steven & Steenbeek, Jeroen & Walters, Carl & Christensen, Villy, 2016. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management," Ecological Modelling, Elsevier, vol. 331(C), pages 173-184.
    4. Libralato, Simone & Solidoro, Cosimo, 2009. "Bridging biogeochemical and food web models for an End-to-End representation of marine ecosystem dynamics: The Venice lagoon case study," Ecological Modelling, Elsevier, vol. 220(21), pages 2960-2971.
    5. Zetina-Rejón, Manuel J. & Cabrera-Neri, Erika & López-Ibarra, Gladis A. & Arcos-Huitrón, N. Enrique & Christensen, Villy, 2015. "Trophic modeling of the continental shelf ecosystem outside of Tabasco, Mexico: A network and modularity analysis," Ecological Modelling, Elsevier, vol. 313(C), pages 314-324.
    6. Steenbeek, Jeroen & Buszowski, Joe & Christensen, Villy & Akoglu, Ekin & Aydin, Kerim & Ellis, Nick & Felinto, Dalai & Guitton, Jerome & Lucey, Sean & Kearney, Kelly & Mackinson, Steven & Pan, Mike & , 2016. "Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations," Ecological Modelling, Elsevier, vol. 319(C), pages 178-189.
    7. Milessi, Andrés C. & Danilo, Calliari & Laura, Rodríguez-Graña & Daniel, Conde & Javier, Sellanes & Rodríguez-Gallego, Lorena, 2010. "Trophic mass-balance model of a subtropical coastal lagoon, including a comparison with a stable isotope analysis of the food-web," Ecological Modelling, Elsevier, vol. 221(24), pages 2859-2869.
    8. Wenzel Kröber & Martin Böhnke & Erik Welk & Christian Wirth & Helge Bruelheide, 2012. "Leaf Trait-Environment Relationships in a Subtropical Broadleaved Forest in South-East China," PLOS ONE, Public Library of Science, vol. 7(4), pages 1-11, April.
    9. Moreau, J. & Palomares, M.L.D. & Torres, F.S.B., Jr. & Pauly, D., 1995. "Atlas demographique des populations de poissons d'eau douce d'Afrique," Monographs, The WorldFish Center, number 10441, April.
    10. Jia, Peiqiao & Hu, Menghong & Hu, Zhongjun & Liu, Qigen & Wu, Zhen, 2012. "Modeling trophic structure and energy flows in a typical macrophyte dominated shallow lake using the mass balanced model," Ecological Modelling, Elsevier, vol. 233(C), pages 26-30.
    11. Pengfei Song & Wen Qin & YanGan Huang & Lei Wang & Zhenyuan Cai & Tongzuo Zhang, 2020. "Grazing Management Influences Gut Microbial Diversity of Livestock in the Same Area," Sustainability, MDPI, vol. 12(10), pages 1-12, May.
    12. Booth, Shawn & Walters, William J & Steenbeek, Jeroen & Christensen, Villy & Charmasson, Sabine, 2020. "An Ecopath with Ecosim model for the Pacific coast of eastern Japan: Describing the marine environment and its fisheries prior to the Great East Japan earthquake," Ecological Modelling, Elsevier, vol. 428(C).
    13. la Grange, Anthony & le Roux, Niël & Gardner-Lubbe, Sugnet, 2009. "BiplotGUI: Interactive Biplots in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 30(i12).
    14. Jonas Eberle & Renier Myburgh & Dirk Ahrens, 2014. "The Evolution of Morphospace in Phytophagous Scarab Chafers: No Competition - No Divergence?," PLOS ONE, Public Library of Science, vol. 9(5), pages 1-16, May.
    15. Liesbeth François & Katrien Wijnrocx & Frédéric G Colinet & Nicolas Gengler & Bettine Hulsegge & Jack J Windig & Nadine Buys & Steven Janssens, 2017. "Genomics of a revived breed: Case study of the Belgian campine cattle," PLOS ONE, Public Library of Science, vol. 12(4), pages 1-14, April.
    16. Díaz López, Bruno & Bunke, Mandy & Bernal Shirai, Julia Andrea, 2008. "Marine aquaculture off Sardinia Island (Italy): Ecosystem effects evaluated through a trophic mass-balance model," Ecological Modelling, Elsevier, vol. 212(3), pages 292-303.
    17. Rochette, S. & Lobry, J. & Lepage, M. & Boët, Ph., 2009. "Dealing with uncertainty in qualitative models with a semi-quantitative approach based on simulations. Application to the Gironde estuarine food web (France)," Ecological Modelling, Elsevier, vol. 220(2), pages 122-132.
    18. Garret Christensen & Allan Dafoe & Edward Miguel & Don A Moore & Andrew K Rose, 2019. "A study of the impact of data sharing on article citations using journal policies as a natural experiment," PLOS ONE, Public Library of Science, vol. 14(12), pages 1-13, December.
    19. Christensen, Villy & de la Puente, Santiago & Sueiro, Juan Carlos & Steenbeek, Jeroen & Majluf, Patricia, 2014. "Valuing seafood: The Peruvian fisheries sector," Marine Policy, Elsevier, vol. 44(C), pages 302-311.
    20. Andreoli-Versbach, Patrick & Mueller-Langer, Frank, 2014. "Open access to data: An ideal professed but not practised," Research Policy, Elsevier, vol. 43(9), pages 1621-1633.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:302:y:2015:i:c:p:42-53. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.