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Coordinate ascent for penalized semiparametric regression on high-dimensional panel count data

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  • Wu, Tong Tong
  • He, Xin

Abstract

This paper explores a fast algorithm to select relevant predictors for the response process with panel count data. Based on the lasso penalized pseudo-objective function derived from an estimating equation, the coordinate ascent accelerates the estimation of regression coefficients. The coordinate ascent algorithm is capable of selecting relevant predictors for underdetermined problems where the number of predictors far exceeds the number of cases. It relies on a tuning constant that can be chosen by generalized cross-validation. Our tests on simulated and real data demonstrate the virtue of penalized regression in model building and prediction for panel count data in ultrahigh-dimensional settings.

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  • Wu, Tong Tong & He, Xin, 2012. "Coordinate ascent for penalized semiparametric regression on high-dimensional panel count data," Computational Statistics & Data Analysis, Elsevier, vol. 56(1), pages 25-33, January.
    • Handle: RePEc:eee:csdana:v:56:y:2012:i:1:p:25-33
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    References listed on IDEAS

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    1. P. Tseng, 2001. "Convergence of a Block Coordinate Descent Method for Nondifferentiable Minimization," Journal of Optimization Theory and Applications, Springer, vol. 109(3), pages 475-494, June.
    2. J. Sun & L. J. Wei, 2000. "Regression analysis of panel count data with covariate‐dependent observation and censoring times," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(2), pages 293-302.
    3. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    4. Xingwei Tong & Xin He & Liuquan Sun & Jianguo Sun, 2009. "Variable Selection for Panel Count Data via Non‐Concave Penalized Estimating Function," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 36(4), pages 620-635, December.
    5. Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
    6. Simon, Noah & Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2011. "Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 39(i05).
    7. Kim, Yongdai & Choi, Hosik & Oh, Hee-Seok, 2008. "Smoothly Clipped Absolute Deviation on High Dimensions," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1665-1673.
    8. Dudoit S. & Fridlyand J. & Speed T. P, 2002. "Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 77-87, March.
    9. Wang, Lifeng & Shen, Xiaotong, 2007. "On L1-Norm Multiclass Support Vector Machines: Methodology and Theory," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 583-594, June.
    10. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
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    Cited by:

    1. Haiying Wang & Yang Li & Jianguo Sun, 2015. "Focused and Model Average Estimation for Regression Analysis of Panel Count Data," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 42(3), pages 732-745, September.

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