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A Gaussian copula joint model for longitudinal and time-to-event data with random effects

Author

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  • Zhang, Zili
  • Charalambous, Christiana
  • Foster, Peter

Abstract

Longitudinal and survival sub-models are two building blocks for joint modelling of longitudinal and time-to-event data. Extensive research indicates separate analysis of these two processes could result in biased outputs due to their associations. Conditional independence between measurements of biomarkers and event time process given latent classes or random effects is a conventional approach for characterising the association between the two sub-models while taking the heterogeneity among the population into account. However, this assumption is difficult to validate because of the unobservable latent variables. Thus a Gaussian copula joint model with random effects is proposed to accommodate the scenarios where the conditional independence assumption is questionable. The conventional joint model assuming conditional independence is a special case of the proposed model when the association parameters in the Gaussian copula shrink to zero. Simulation studies and real data application are carried out to evaluate the performance of the proposed model with different correlation structures. In addition, personalised dynamic predictions of survival probabilities are obtained based on the proposed model and comparisons are made to the predictions obtained under the conventional joint model.

Suggested Citation

  • Zhang, Zili & Charalambous, Christiana & Foster, Peter, 2023. "A Gaussian copula joint model for longitudinal and time-to-event data with random effects," Computational Statistics & Data Analysis, Elsevier, vol. 181(C).
  • Handle: RePEc:eee:csdana:v:181:y:2023:i:c:s0167947322002651
    DOI: 10.1016/j.csda.2022.107685
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    References listed on IDEAS

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    1. Dimitris Rizopoulos, 2011. "Dynamic Predictions and Prospective Accuracy in Joint Models for Longitudinal and Time-to-Event Data," Biometrics, The International Biometric Society, vol. 67(3), pages 819-829, September.
    2. Lin H. & Turnbull B. W. & McCulloch C. E. & Slate E. H., 2002. "Latent Class Models for Joint Analysis of Longitudinal Biomarker and Event Process Data: Application to Longitudinal Prostate-Specific Antigen Readings and Prostate Cancer," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 53-65, March.
    3. Philipson, Pete & Hickey, Graeme L. & Crowther, Michael J. & Kolamunnage-Dona, Ruwanthi, 2020. "Faster Monte Carlo estimation of joint models for time-to-event and multivariate longitudinal data," Computational Statistics & Data Analysis, Elsevier, vol. 151(C).
    4. Dimitris Rizopoulos & Geert Verbeke & Geert Molenberghs, 2008. "Shared parameter models under random effects misspecification," Biometrika, Biometrika Trust, vol. 95(1), pages 63-74.
    5. Xiao Song & Marie Davidian & Anastasios A. Tsiatis, 2002. "A Semiparametric Likelihood Approach to Joint Modeling of Longitudinal and Time-to-Event Data," Biometrics, The International Biometric Society, vol. 58(4), pages 742-753, December.
    6. Eleni†Rosalina Andrinopoulou & Paul H. C. Eilers & Johanna J. M. Takkenberg & Dimitris Rizopoulos, 2018. "Improved dynamic predictions from joint models of longitudinal and survival data with time†varying effects using P†splines," Biometrics, The International Biometric Society, vol. 74(2), pages 685-693, June.
    7. Dimitris Rizopoulos & Geert Verbeke & Emmanuel Lesaffre, 2009. "Fully exponential Laplace approximations for the joint modelling of survival and longitudinal data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(3), pages 637-654, June.
    8. Guo X. & Carlin B.P., 2004. "Separate and Joint Modeling of Longitudinal and Event Time Data Using Standard Computer Packages," The American Statistician, American Statistical Association, vol. 58, pages 16-24, February.
    9. Li, Kan & Luo, Sheng, 2019. "Bayesian functional joint models for multivariate longitudinal and time-to-event data," Computational Statistics & Data Analysis, Elsevier, vol. 129(C), pages 14-29.
    10. Taban Baghfalaki & Mojtaba Ganjali & Geert Verbeke, 2017. "A shared parameter model of longitudinal measurements and survival time with heterogeneous random-effects distribution," Journal of Applied Statistics, Taylor & Francis Journals, vol. 44(15), pages 2813-2836, November.
    11. Murray, James & Philipson, Pete, 2022. "A fast approximate EM algorithm for joint models of survival and multivariate longitudinal data," Computational Statistics & Data Analysis, Elsevier, vol. 170(C).
    12. Hélène Jacqmin-Gadda & Cécile Proust-Lima & Jeremy M.G. Taylor & Daniel Commenges, 2010. "Score Test for Conditional Independence Between Longitudinal Outcome and Time to Event Given the Classes in the Joint Latent Class Model," Biometrics, The International Biometric Society, vol. 66(1), pages 11-19, March.
    13. Bernhardt, Paul W. & Zhang, Daowen & Wang, Huixia Judy, 2015. "A fast EM algorithm for fitting joint models of a binary response and multiple longitudinal covariates subject to detection limits," Computational Statistics & Data Analysis, Elsevier, vol. 85(C), pages 37-53.
    14. Zhuang, Haoxin & Diao, Liqun & Yi, Grace Y., 2022. "A Bayesian nonparametric mixture model for grouping dependence structures and selecting copula functions," Econometrics and Statistics, Elsevier, vol. 22(C), pages 172-189.
    15. Amal Saki Malehi & Ebrahim Hajizadeh & Kambiz A. Ahmadi & Parvin Mansouri, 2015. "Joint modelling of longitudinal biomarker and gap time between recurrent events: copula-based dependence," Journal of Applied Statistics, Taylor & Francis Journals, vol. 42(9), pages 1931-1945, September.
    16. Rizopoulos, Dimitris, 2012. "Fast fitting of joint models for longitudinal and event time data using a pseudo-adaptive Gaussian quadrature rule," Computational Statistics & Data Analysis, Elsevier, vol. 56(3), pages 491-501.
    17. Dimitris Rizopoulos & Geert Verbeke & Emmanuel Lesaffre & Yves Vanrenterghem, 2008. "A Two-Part Joint Model for the Analysis of Survival and Longitudinal Binary Data with Excess Zeros," Biometrics, The International Biometric Society, vol. 64(2), pages 611-619, June.
    18. Rizopoulos, Dimitris, 2010. "JM: An R Package for the Joint Modelling of Longitudinal and Time-to-Event Data," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 35(i09).
    19. Liu, Yue & Liu, Lei & Zhou, Jianhui, 2015. "Joint latent class model of survival and longitudinal data: An application to CPCRA study," Computational Statistics & Data Analysis, Elsevier, vol. 91(C), pages 40-50.
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