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A fast EM algorithm for fitting joint models of a binary response and multiple longitudinal covariates subject to detection limits

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  • Bernhardt, Paul W.
  • Zhang, Daowen
  • Wang, Huixia Judy

Abstract

Joint modeling techniques have become a popular strategy for studying the association between a response and one or more longitudinal covariates. Motivated by the GenIMS study, where it is of interest to model the event of survival using censored longitudinal biomarkers, a joint model is proposed for describing the relationship between a binary outcome and multiple longitudinal covariates subject to detection limits. A fast, approximate EM algorithm is developed that reduces the dimension of integration in the E-step of the algorithm to one, regardless of the number of random effects in the joint model. Numerical studies demonstrate that the proposed approximate EM algorithm leads to satisfactory parameter and variance estimates in situations with and without censoring on the longitudinal covariates. The approximate EM algorithm is applied to analyze the GenIMS data set.

Suggested Citation

  • Bernhardt, Paul W. & Zhang, Daowen & Wang, Huixia Judy, 2015. "A fast EM algorithm for fitting joint models of a binary response and multiple longitudinal covariates subject to detection limits," Computational Statistics & Data Analysis, Elsevier, vol. 85(C), pages 37-53.
  • Handle: RePEc:eee:csdana:v:85:y:2015:i:c:p:37-53
    DOI: 10.1016/j.csda.2014.11.011
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    References listed on IDEAS

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    1. Bernhardt, Paul W. & Wang, Huixia Judy & Zhang, Daowen, 2014. "Flexible modeling of survival data with covariates subject to detection limits via multiple imputation," Computational Statistics & Data Analysis, Elsevier, vol. 69(C), pages 81-91.
    2. C. Y. Wang & Naisyin Wang & Suojin Wang, 2000. "Regression Analysis When Covariates Are Regression Parameters of a Random Effects Model for Observed Longitudinal Measurements," Biometrics, The International Biometric Society, vol. 56(2), pages 487-495, June.
    3. Erning Li & Naisyin Wang & Nae-Yuh Wang, 2007. "Joint Models for a Primary Endpoint and Multiple Longitudinal Covariate Processes," Biometrics, The International Biometric Society, vol. 63(4), pages 1068-1078, December.
    4. Thomas R. Ten Have & Michael E. Miller & Beth A. Reboussin & Margaret K. James, 2000. "Mixed Effects Logistic Regression Models for Longitudinal Ordinal Functional Response Data with Multiple-Cause Drop-Out from the Longitudinal Study of Aging," Biometrics, The International Biometric Society, vol. 56(1), pages 279-287, March.
    5. Dimitris Rizopoulos & Geert Verbeke & Emmanuel Lesaffre, 2009. "Fully exponential Laplace approximations for the joint modelling of survival and longitudinal data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(3), pages 637-654, June.
    6. Li, Erning & Zhang, Daowen & Davidian, Marie, 2007. "Likelihood and pseudo-likelihood methods for semiparametric joint models for a primary endpoint and longitudinal data," Computational Statistics & Data Analysis, Elsevier, vol. 51(12), pages 5776-5790, August.
    7. Erning Li & Daowen Zhang & Marie Davidian, 2004. "Conditional Estimation for Generalized Linear Models When Covariates Are Subject-Specific Parameters in a Mixed Model for Longitudinal Measurements," Biometrics, The International Biometric Society, vol. 60(1), pages 1-7, March.
    8. Robert H. Lyles & Cynthia M. Lyles & Douglas J. Taylor, 2000. "Random regression models for human immunodeficiency virus ribonucleic acid data subject to left censoring and informative drop‐outs," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 49(4), pages 485-497.
    9. Rizopoulos, Dimitris, 2012. "Fast fitting of joint models for longitudinal and event time data using a pseudo-adaptive Gaussian quadrature rule," Computational Statistics & Data Analysis, Elsevier, vol. 56(3), pages 491-501.
    10. Martin, Andrew D. & Quinn, Kevin M. & Park, Jong Hee, 2011. "MCMCpack: Markov Chain Monte Carlo in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 42(i09).
    11. Hwang, Yi-Ting & Tsai, Hao-Yun & Chang, Yeu-Jhy & Kuo, Hsun-Chih & Wang, Chun-Chao, 2011. "The joint model of the logistic model and linear random effect model -- An application to predict orthostatic hypertension for subacute stroke patients," Computational Statistics & Data Analysis, Elsevier, vol. 55(1), pages 914-923, January.
    12. Francis Pike & Lisa Weissfeld, 2013. "Joint modeling of censored longitudinal and event time data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 40(1), pages 17-27, January.
    13. Wu L., 2002. "A Joint Model for Nonlinear Mixed-Effects Models With Censoring and Covariates Measured With Error, With Application to AIDS Studies," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 955-964, December.
    14. Ying Yuan & Roderick J. A. Little, 2009. "Mixed-Effect Hybrid Models for Longitudinal Data with Nonignorable Dropout," Biometrics, The International Biometric Society, vol. 65(2), pages 478-486, June.
    15. Proust-Lima, Cécile & Joly, Pierre & Dartigues, Jean-François & Jacqmin-Gadda, Hélène, 2009. "Joint modelling of multivariate longitudinal outcomes and a time-to-event: A nonlinear latent class approach," Computational Statistics & Data Analysis, Elsevier, vol. 53(4), pages 1142-1154, February.
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    3. Maire, Florian & Moulines, Eric & Lefebvre, Sidonie, 2017. "Online EM for functional data," Computational Statistics & Data Analysis, Elsevier, vol. 111(C), pages 27-47.
    4. Lili Wang & Sunit Mistry & Abdulkadir Abdulahi Hasan & Abdiaziz Omar Hassan & Yousuf Islam & Frimpong Atta Junior Osei, 2023. "Implementation of a Collaborative Recommendation System Based on Multi-Clustering," Mathematics, MDPI, vol. 11(6), pages 1-21, March.
    5. Toshihiro Misumi, 2022. "Joint modeling for longitudinal covariate and binary outcome via h-likelihood," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 31(5), pages 1225-1243, December.
    6. Murray, James & Philipson, Pete, 2022. "A fast approximate EM algorithm for joint models of survival and multivariate longitudinal data," Computational Statistics & Data Analysis, Elsevier, vol. 170(C).
    7. Zhang, Zili & Charalambous, Christiana & Foster, Peter, 2023. "A Gaussian copula joint model for longitudinal and time-to-event data with random effects," Computational Statistics & Data Analysis, Elsevier, vol. 181(C).

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