IDEAS home Printed from https://ideas.repec.org/a/spr/stmapp/v31y2022i2d10.1007_s10260-021-00606-1.html
   My bibliography  Save this article

Discussion to: Bayesian graphical models for modern biological applications by Y. Ni, V. Baladandayuthapani, M. Vannucci and F.C. Stingo

Author

Listed:
  • Yize Zhao

    (Yale University)

  • Zhe Sun

    (Yale University)

  • Jian Kang

    (University of Michigan)

Abstract

This discussion provides comments for the reviewed methods and the potential future directions based on the review paper “Bayesian Graphical Models for Modern Biological Applications”. Simulations are conducted to assess model performance.

Suggested Citation

  • Yize Zhao & Zhe Sun & Jian Kang, 2022. "Discussion to: Bayesian graphical models for modern biological applications by Y. Ni, V. Baladandayuthapani, M. Vannucci and F.C. Stingo," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 31(2), pages 279-286, June.
  • Handle: RePEc:spr:stmapp:v:31:y:2022:i:2:d:10.1007_s10260-021-00606-1
    DOI: 10.1007/s10260-021-00606-1
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s10260-021-00606-1
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s10260-021-00606-1?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. J. Møller & A. N. Pettitt & R. Reeves & K. K. Berthelsen, 2006. "An efficient Markov chain Monte Carlo method for distributions with intractable normalising constants," Biometrika, Biometrika Trust, vol. 93(2), pages 451-458, June.
    2. Patrick Danaher & Pei Wang & Daniela M. Witten, 2014. "The joint graphical lasso for inverse covariance estimation across multiple classes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(2), pages 373-397, March.
    3. Elin Shaddox & Francesco C. Stingo & Christine B. Peterson & Sean Jacobson & Charmion Cruickshank-Quinn & Katerina Kechris & Russell Bowler & Marina Vannucci, 2018. "A Bayesian Approach for Learning Gene Networks Underlying Disease Severity in COPD," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 10(1), pages 59-85, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yang Ni & Veerabhadran Baladandayuthapani & Marina Vannucci & Francesco C. Stingo, 2022. "Bayesian graphical models for modern biological applications," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 31(2), pages 197-225, June.
    2. Christine B. Peterson & Nathan Osborne & Francesco C. Stingo & Pierrick Bourgeat & James D. Doecke & Marina Vannucci, 2020. "Bayesian modeling of multiple structural connectivity networks during the progression of Alzheimer's disease," Biometrics, The International Biometric Society, vol. 76(4), pages 1120-1132, December.
    3. Rajala, T. & Penttinen, A., 2014. "Bayesian analysis of a Gibbs hard-core point pattern model with varying repulsion range," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 530-541.
    4. Laleh Tafakori & Armin Pourkhanali & Riccardo Rastelli, 2022. "Measuring systemic risk and contagion in the European financial network," Empirical Economics, Springer, vol. 63(1), pages 345-389, July.
    5. Del Negro, Marco & Schorfheide, Frank, 2008. "Forming priors for DSGE models (and how it affects the assessment of nominal rigidities)," Journal of Monetary Economics, Elsevier, vol. 55(7), pages 1191-1208, October.
    6. Dong Liu & Changwei Zhao & Yong He & Lei Liu & Ying Guo & Xinsheng Zhang, 2023. "Simultaneous cluster structure learning and estimation of heterogeneous graphs for matrix‐variate fMRI data," Biometrics, The International Biometric Society, vol. 79(3), pages 2246-2259, September.
    7. Mehran Aflakparast & Mathisca de Gunst & Wessel van Wieringen, 2020. "Analysis of Twitter data with the Bayesian fused graphical lasso," PLOS ONE, Public Library of Science, vol. 15(7), pages 1-28, July.
    8. Alessandro Casa & Andrea Cappozzo & Michael Fop, 2022. "Group-Wise Shrinkage Estimation in Penalized Model-Based Clustering," Journal of Classification, Springer;The Classification Society, vol. 39(3), pages 648-674, November.
    9. Wessel N. van Wieringen & Carel F. W. Peeters & Renee X. de Menezes & Mark A. van de Wiel, 2018. "Testing for pathway (in)activation by using Gaussian graphical models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 67(5), pages 1419-1436, November.
    10. Byol Kim & Song Liu & Mladen Kolar, 2021. "Two‐sample inference for high‐dimensional Markov networks," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(5), pages 939-962, November.
    11. van Wieringen, Wessel N. & Stam, Koen A. & Peeters, Carel F.W. & van de Wiel, Mark A., 2020. "Updating of the Gaussian graphical model through targeted penalized estimation," Journal of Multivariate Analysis, Elsevier, vol. 178(C).
    12. Bee, Marco & Benedetti, Roberto & Espa, Giuseppe, 2017. "Approximate maximum likelihood estimation of the Bingham distribution," Computational Statistics & Data Analysis, Elsevier, vol. 108(C), pages 84-96.
    13. Luigi Spezia, 2019. "Modelling covariance matrices by the trigonometric separation strategy with application to hidden Markov models," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 28(2), pages 399-422, June.
    14. Shanghong Xie & Xiang Li & Peter McColgan & Rachael I. Scahill & Donglin Zeng & Yuanjia Wang, 2020. "Identifying disease‐associated biomarker network features through conditional graphical model," Biometrics, The International Biometric Society, vol. 76(3), pages 995-1006, September.
    15. Shane Barratt & Stephen Boyd, 2020. "Multi-Period Liability Clearing via Convex Optimal Control," Papers 2005.09066, arXiv.org.
    16. James C. Russell & Ephraim M. Hanks & Murali Haran, 2016. "Dynamic Models of Animal Movement with Spatial Point Process Interactions," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 21(1), pages 22-40, March.
    17. Emma Pierson & the GTEx Consortium & Daphne Koller & Alexis Battle & Sara Mostafavi, 2015. "Sharing and Specificity of Co-expression Networks across 35 Human Tissues," PLOS Computational Biology, Public Library of Science, vol. 11(5), pages 1-19, May.
    18. Zongliang Hu & Zhishui Hu & Kai Dong & Tiejun Tong & Yuedong Wang, 2021. "A shrinkage approach to joint estimation of multiple covariance matrices," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 84(3), pages 339-374, April.
    19. Claudia Angelini & Daniela De Canditiis & Anna Plaksienko, 2021. "Jewel : A Novel Method for Joint Estimation of Gaussian Graphical Models," Mathematics, MDPI, vol. 9(17), pages 1-24, August.
    20. Solaiman Afroughi & Soghrat Faghihzadeh & Majid Jafari Khaledi & Mehdi Ghandehari Motlagh & Ebrahim Hajizadeh, 2011. "Analysis of clustered spatially correlated binary data using autologistic model and Bayesian method with an application to dental caries of 3--5-year-old children," Journal of Applied Statistics, Taylor & Francis Journals, vol. 38(12), pages 2763-2774, February.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:stmapp:v:31:y:2022:i:2:d:10.1007_s10260-021-00606-1. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.